Approximate Graph Coloring by Semidefinite Programming

We consider the problem of coloring k-colorable graphs with the fewest possible colors. We present a randomized polynomial time algorithm that colors a 3-colorable graph on $n$ vertices with min O(Delta^{1/3} log^{1/2} Delta log n), O(n^{1/4} log^{1/2} n) colors where Delta is the maximum degree of any vertex. Besides giving the best known approximation ratio in terms of n, this marks the first non-trivial approximation result as a function of the maximum degree Delta. This result can be generalized to k-colorable graphs to obtain a coloring using min O(Delta^{1-2/k} log^{1/2} Delta log n), O(n^{1-3/(k+1)} log^{1/2} n) colors. Our results are inspired by the recent work of Goemans and Williamson who used an algorithm for semidefinite optimization problems, which generalize linear programs, to obtain improved approximations for the MAX CUT and MAX 2-SAT problems. An intriguing outcome of our work is a duality relationship established between the value of the optimum solution to our semidefinite program and the Lovasz theta-function. We show lower bounds on the gap between the optimum solution of our semidefinite program and the actual chromatic number; by duality this also demonstrates interesting new facts about the theta-function

Diophantine approximation and coloring

We demonstrate how connections between graph theory and Diophantine approximation can be used in conjunction to give simple and accessible proofs of seemingly difficult results in both subjects.Comment: 16 pages, pre-publication version of paper which will appear in American Mathematical Monthl

Approximation Algorithms for Partially Colorable Graphs

Graph coloring problems are a central topic of study in the theory of algorithms. We study the problem of partially coloring partially colorable graphs. For alpha = alpha |V| such that the graph induced on S is k-colorable. Partial k-colorability is a more robust structural property of a graph than k-colorability. For graphs that arise in practice, partial k-colorability might be a better notion to use than k-colorability, since data arising in practice often contains various forms of noise. We give a polynomial time algorithm that takes as input a (1 - epsilon)-partially 3-colorable graph G and a constant gamma in [epsilon, 1/10], and colors a (1 - epsilon/gamma) fraction of the vertices using O~(n^{0.25 + O(gamma^{1/2})}) colors. We also study natural semi-random families of instances of partially 3-colorable graphs and partially 2-colorable graphs, and give stronger bi-criteria approximation guarantees for these family of instances

On combinatorial optimisation in analysis of protein-protein interaction and protein folding networks

Abstract: Protein-protein interaction networks and protein folding networks represent prominent research topics at the intersection of bioinformatics and network science. In this paper, we present a study of these networks from combinatorial optimisation point of view. Using a combination of classical heuristics and stochastic optimisation techniques, we were able to identify several interesting combinatorial properties of biological networks of the COSIN project. We obtained optimal or near-optimal solutions to maximum clique and chromatic number problems for these networks. We also explore patterns of both non-overlapping and overlapping cliques in these networks. Optimal or near-optimal solutions to partitioning of these networks into non-overlapping cliques and to maximum independent set problem were discovered. Maximal cliques are explored by enumerative techniques. Domination in these networks is briefly studied, too. Applications and extensions of our findings are discussed

On Coloring Resilient Graphs

We introduce a new notion of resilience for constraint satisfaction problems, with the goal of more precisely determining the boundary between NP-hardness and the existence of efficient algorithms for resilient instances. In particular, we study $r$-resiliently $k$-colorable graphs, which are those $k$-colorable graphs that remain $k$-colorable even after the addition of any $r$ new edges. We prove lower bounds on the NP-hardness of coloring resiliently colorable graphs, and provide an algorithm that colors sufficiently resilient graphs. We also analyze the corresponding notion of resilience for $k$-SAT. This notion of resilience suggests an array of open questions for graph coloring and other combinatorial problems.Comment: Appearing in MFCS 201