IMP: Indirect Memory Prefetcher

Machine learning, graph analytics and sparse linear algebra-based applications are dominated by irregular memory accesses resulting from following edges in a graph or non-zero elements in a sparse matrix. These accesses have little temporal or spatial locality, and thus incur long memory stalls and large bandwidth requirements. A traditional streaming or striding prefetcher cannot capture these irregular access patterns. A majority of these irregular accesses come from indirect patterns of the form A[B[i]]. We propose an efficient hardware indirect memory prefetcher (IMP) to capture this access pattern and hide latency. We also propose a partial cacheline accessing mechanism for these prefetches to reduce the network and DRAM bandwidth pressure from the lack of spatial locality. Evaluated on 7 applications, IMP shows 56% speedup on average (up to 2.3×) compared to a baseline 64 core system with streaming prefetchers. This is within 23% of an idealized system. With partial cacheline accessing, we see another 9.4% speedup on average (up to 46.6%).Intel Science and Technology Center for Big Dat

Improving Model-Based Software Synthesis: A Focus on Mathematical Structures

Computer hardware keeps increasing in complexity. Software design needs to keep up with this. The right models and abstractions empower developers to leverage the novelties of modern hardware. This thesis deals primarily with Models of Computation, as a basis for software design, in a family of methods called software synthesis. We focus on Kahn Process Networks and dataflow applications as abstractions, both for programming and for deriving an efficient execution on heterogeneous multicores. The latter we accomplish by exploring the design space of possible mappings of computation and data to hardware resources. Mapping algorithms are not at the center of this thesis, however. Instead, we examine the mathematical structure of the mapping space, leveraging its inherent symmetries or geometric properties to improve mapping methods in general. This thesis thoroughly explores the process of model-based design, aiming to go beyond the more established software synthesis on dataflow applications. We starting with the problem of assessing these methods through benchmarking, and go on to formally examine the general goals of benchmarks. In this context, we also consider the role modern machine learning methods play in benchmarking. We explore different established semantics, stretching the limits of Kahn Process Networks. We also discuss novel models, like Reactors, which are designed to be a deterministic, adaptive model with time as a first-class citizen. By investigating abstractions and transformations in the Ohua language for implicit dataflow programming, we also focus on programmability. The focus of the thesis is in the models and methods, but we evaluate them in diverse use-cases, generally centered around Cyber-Physical Systems. These include the 5G telecommunication standard, automotive and signal processing domains. We even go beyond embedded systems and discuss use-cases in GPU programming and microservice-based architectures

GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra

We propose GraphMineSuite (GMS): the first benchmarking suite for graph mining that facilitates evaluating and constructing high-performance graph mining algorithms. First, GMS comes with a benchmark specification based on extensive literature review, prescribing representative problems, algorithms, and datasets. Second, GMS offers a carefully designed software platform for seamless testing of different fine-grained elements of graph mining algorithms, such as graph representations or algorithm subroutines. The platform includes parallel implementations of more than 40 considered baselines, and it facilitates developing complex and fast mining algorithms. High modularity is possible by harnessing set algebra operations such as set intersection and difference, which enables breaking complex graph mining algorithms into simple building blocks that can be separately experimented with. GMS is supported with a broad concurrency analysis for portability in performance insights, and a novel performance metric to assess the throughput of graph mining algorithms, enabling more insightful evaluation. As use cases, we harness GMS to rapidly redesign and accelerate state-of-the-art baselines of core graph mining problems: degeneracy reordering (by up to >2x), maximal clique listing (by up to >9x), k-clique listing (by 1.1x), and subgraph isomorphism (by up to 2.5x), also obtaining better theoretical performance bounds

Soft Computing Techiniques for the Protein Folding Problem on High Performance Computing Architectures

The protein-folding problem has been extensively studied during the last fifty years. The understanding of the dynamics of global shape of a protein and the influence on its biological function can help us to discover new and more effective drugs to deal with diseases of pharmacological relevance. Different computational approaches have been developed by different researchers in order to foresee the threedimensional arrangement of atoms of proteins from their sequences. However, the computational complexity of this problem makes mandatory the search for new models, novel algorithmic strategies and hardware platforms that provide solutions in a reasonable time frame. We present in this revision work the past and last tendencies regarding protein folding simulations from both perspectives; hardware and software. Of particular interest to us are both the use of inexact solutions to this computationally hard problem as well as which hardware platforms have been used for running this kind of Soft Computing techniques.This work is jointly supported by the FundaciónSéneca (Agencia Regional de Ciencia y Tecnología, Región de Murcia) under grants 15290/PI/2010 and 18946/JLI/13, by the Spanish MEC and European Commission FEDER under grant with reference TEC2012-37945-C02-02 and TIN2012-31345, by the Nils Coordinated Mobility under grant 012-ABEL-CM-2014A, in part financed by the European Regional Development Fund (ERDF). We also thank NVIDIA for hardware donation within UCAM GPU educational and research centers.Ingeniería, Industria y Construcció

Software-based and regionally-oriented traffic management in Networks-on-Chip

Since the introduction of chip-multiprocessor systems, the number of integrated cores has been steady growing and workload applications have been adapted to exploit the increasing parallelism. This changed the importance of efficient on-chip communication significantly and the infrastructure has to keep step with these new requirements. The work at hand makes significant contributions to the state-of-the-art of the latest generation of such solutions, called Networks-on-Chip, to improve the performance, reliability, and flexible management of these on-chip infrastructures

Runtime Management of Multiprocessor Systems for Fault Tolerance, Energy Efficiency and Load Balancing

Efficiency of modern multiprocessor systems is hurt by unpredictable events: aging causes permanent faults that disable components; application spawnings and terminations taking place at arbitrary times, affect energy proportionality, causing energy waste; load imbalances reduce resource utilization, penalizing performance. This thesis demonstrates how runtime management can mitigate the negative effects of unpredictable events, making decisions guided by a combination of static information known in advance and parameters that only become known at runtime. We propose techniques for three different objectives: graceful degradation of aging-prone systems; energy efficiency of heterogeneous adaptive systems; and load balancing by means of work stealing. Managing aging-prone systems for graceful efficiency degradation, is based on a high-level system description that encapsulates hardware reconfigurability and workload flexibility and allows to quantify system efficiency and use it as an objective function. Different custom heuristics, as well as simulated annealing and a genetic algorithm are proposed to optimize this objective function as a response to component failures. Custom heuristics are one to two orders of magnitude faster, provide better efficiency for the first 20% of system lifetime and are less than 13% worse than a genetic algorithm at the end of this lifetime. Custom heuristics occasionally fail to satisfy reconfiguration cost constraints. As all algorithms\u27 execution time scales well with respect to system size, a genetic algorithm can be used as backup in these cases. Managing heterogeneous multiprocessors capable of Dynamic Voltage and Frequency Scaling is based on a model that accurately predicts performance and power: performance is predicted by combining static, application-specific profiling information and dynamic, runtime performance monitoring data; power is predicted using the aforementioned performance estimations and a set of platform-specific, static parameters, determined only once and used for every application mix. Three runtime heuristics are proposed, that make use of this model to perform partial search of the configuration space, evaluating a small set of configurations and selecting the best one. When best-effort performance is adequate, the proposed approach achieves 3% higher energy efficiency compared to the powersave governor and 2x better compared to the interactive and ondemand governors. When individual applications\u27 performance requirements are considered, the proposed approach is able to satisfy them, giving away 18% of system\u27s energy efficiency compared to the powersave, which however misses the performance targets by 23%; at the same time, the proposed approach maintains an efficiency advantage of about 55% compared to the other governors, which also satisfy the requirements. Lastly, to improve load balancing of multiprocessors, a partial and approximate view of the current load distribution among system cores is proposed, which consists of lightweight data structures and is maintained by each core through cheap operations. A runtime algorithm is developed, using this view whenever a core becomes idle, to perform victim core selection for work stealing, also considering system topology and memory hierarchy. Among 12 diverse imbalanced workloads, the proposed approach achieves better performance than random, hierarchical and local stealing for six workloads. Furthermore, it is at most 8% slower among the other six workloads, while competing strategies incur a penalty of at least 89% on some workload

High Performance Transaction Processing on Non-Uniform Hardware Topologies

Transaction processing is a mission critical enterprise application that runs on high-end servers. Traditionally, transaction processing systems have been designed for uniform core-to-core communication latencies. In the past decade, with the emergence of multisocket multicores, for the first time we have Islands, i.e., groups of cores that communicate fast among themselves and slower with other groups. In current mainstream servers, each multicore processor corresponds to an Island. As the number of cores on a chip increases, however, we expect that multiple Islands will form within a single processor in the nearby future. In addition, the access latencies to the local memory and to the memory of another server over fast interconnect are converging, thus creating a hierarchy of Islands within a group of servers. Non-uniform hardware topologies pose a significant challenge to the scalability and the predictability of performance of transaction processing systems. Distributed transaction processing systems can alleviate this problem; however, no single deployment configuration is optimal for all workloads and hardware topologies. In order to fully utilize the available processing power, a transaction processing system needs to adapt to the underlying hardware topology and tune its configuration to the current workload. More specifically, the system should be able to detect any changes to the workload and hardware topology, and adapt accordingly without disrupting the processing. In this thesis, we first systematically quantify the impact of hardware Islands on deployment configurations of distributed transaction processing systems. We show that none of these configurations is optimal for all workloads, and the choice of the optimal configuration depends on the combination of the workload and hardware topology. In the cluster setting, on the other hand, the choice of optimal configuration additionally depends on the properties of the communication channel between the servers. We address this challenge by designing a dynamic shared-everything system that adapts its data structures automatically to hardware Islands. To ensure good performance in the presence of shifting workload patterns, we use a lightweight partitioning and placement mechanism to balance the load and minimize the synchronization overheads across Islands. Overall, we show that masking the non-uniformity of inter-core communication is critical for achieving predictably high performance for latency-sensitive applications, such as transaction processing. With clusters of a handful of multicore chips with large main memories replacing high-end many-socket servers, the deployment rules of thumb identified in our analysis have a potential to significantly reduce the synchronization and communication costs of transaction processing. As workloads become more dynamic and diverse, while still running on partitioned infrastructure, the lightweight monitoring and adaptive repartitioning mechanisms proposed in this thesis will be applicable to a wide range of designs for which traditional offline schemes are impractical

Proceedings of the 5th International Workshop on Reconfigurable Communication-centric Systems on Chip 2010 - ReCoSoC\u2710 - May 17-19, 2010 Karlsruhe, Germany. (KIT Scientific Reports ; 7551)

ReCoSoC is intended to be a periodic annual meeting to expose and discuss gathered expertise as well as state of the art research around SoC related topics through plenary invited papers and posters. The workshop aims to provide a prospective view of tomorrow\u27s challenges in the multibillion transistor era, taking into account the emerging techniques and architectures exploring the synergy between flexible on-chip communication and system reconfigurability

High-level services for networks-on-chip

Future technology trends envision that next-generation Multiprocessors Systems-on- Chip (MPSoCs) will be composed of a combination of a large number of processing and storage elements interconnected by complex communication architectures. Communication and interconnection between these basic blocks play a role of crucial importance when the number of these elements increases. Enabling reliable communication channels between cores becomes therefore a challenge for system designers. Networks-on-Chip (NoCs) appeared as a strategy for connecting and managing the communication between several design elements and IP blocks, as required in complex Systems-on-Chip (SoCs). The topic can be considered as a multidisciplinary synthesis of multiprocessing, parallel computing, networking, and on- chip communication domains. Networks-on-Chip, in addition to standard communication services, can be employed for providing support for the implementation of system-level services. This dissertation will demonstrate how high-level services can be added to an MPSoC platform by embedding appropriate hardware/software support in the network interfaces (NIs) of the NoC. In this dissertation, the implementation of innovative modules acting in parallel with protocol translation and data transmission in NIs is proposed and evaluated. The modules can support the execution of the high-level services in the NoC at a relatively low cost in terms of area and energy consumption. Three types of services will be addressed and discussed: security, monitoring, and fault tolerance. With respect to the security aspect, this dissertation will discuss the implementation of an innovative data protection mechanism for detecting and preventing illegal accesses to protected memory blocks and/or memory mapped peripherals. The second aspect will be addressed by proposing the implementation of a monitoring system based on programmable multipurpose monitoring probes aimed at detecting NoC internal events and run-time characteristics. As last topic, new architectural solutions for the design of fault tolerant network interfaces will be presented and discussed