Representation Learning for Scale-free Networks

Network embedding aims to learn the low-dimensional representations of vertexes in a network, while structure and inherent properties of the network is preserved. Existing network embedding works primarily focus on preserving the microscopic structure, such as the first- and second-order proximity of vertexes, while the macroscopic scale-free property is largely ignored. Scale-free property depicts the fact that vertex degrees follow a heavy-tailed distribution (i.e., only a few vertexes have high degrees) and is a critical property of real-world networks, such as social networks. In this paper, we study the problem of learning representations for scale-free networks. We first theoretically analyze the difficulty of embedding and reconstructing a scale-free network in the Euclidean space, by converting our problem to the sphere packing problem. Then, we propose the "degree penalty" principle for designing scale-free property preserving network embedding algorithm: punishing the proximity between high-degree vertexes. We introduce two implementations of our principle by utilizing the spectral techniques and a skip-gram model respectively. Extensive experiments on six datasets show that our algorithms are able to not only reconstruct heavy-tailed distributed degree distribution, but also outperform state-of-the-art embedding models in various network mining tasks, such as vertex classification and link prediction.Comment: 8 figures; accepted by AAAI 201

DiffKendall: A Novel Approach for Few-Shot Learning with Differentiable Kendall's Rank Correlation

Few-shot learning aims to adapt models trained on the base dataset to novel tasks where the categories are not seen by the model before. This often leads to a relatively uniform distribution of feature values across channels on novel classes, posing challenges in determining channel importance for novel tasks. Standard few-shot learning methods employ geometric similarity metrics such as cosine similarity and negative Euclidean distance to gauge the semantic relatedness between two features. However, features with high geometric similarities may carry distinct semantics, especially in the context of few-shot learning. In this paper, we demonstrate that the importance ranking of feature channels is a more reliable indicator for few-shot learning than geometric similarity metrics. We observe that replacing the geometric similarity metric with Kendall's rank correlation only during inference is able to improve the performance of few-shot learning across a wide range of datasets with different domains. Furthermore, we propose a carefully designed differentiable loss for meta-training to address the non-differentiability issue of Kendall's rank correlation. Extensive experiments demonstrate that the proposed rank-correlation-based approach substantially enhances few-shot learning performance

Scene Graph Embeddings Using Relative Similarity Supervision

Scene graphs are a powerful structured representation of the underlying content of images, and embeddings derived from them have been shown to be useful in multiple downstream tasks. In this work, we employ a graph convolutional network to exploit structure in scene graphs and produce image embeddings useful for semantic image retrieval. Different from classification-centric supervision traditionally available for learning image representations, we address the task of learning from relative similarity labels in a ranking context. Rooted within the contrastive learning paradigm, we propose a novel loss function that operates on pairs of similar and dissimilar images and imposes relative ordering between them in embedding space. We demonstrate that this Ranking loss, coupled with an intuitive triple sampling strategy, leads to robust representations that outperform well-known contrastive losses on the retrieval task. In addition, we provide qualitative evidence of how retrieved results that utilize structured scene information capture the global context of the scene, different from visual similarity search.Comment: Accepted to AAAI 202

Statistical Phylogenetic Tree Analysis Using Differences of Means

We propose a statistical method to test whether two phylogenetic trees with given alignments are significantly incongruent. Our method compares the two distributions of phylogenetic trees given by the input alignments, instead of comparing point estimations of trees. This statistical approach can be applied to gene tree analysis for example, detecting unusual events in genome evolution such as horizontal gene transfer and reshuffling. Our method uses difference of means to compare two distributions of trees, after embedding trees in a vector space. Bootstrapping alignment columns can then be applied to obtain p-values. To compute distances between means, we employ a "kernel trick" which speeds up distance calculations when trees are embedded in a high-dimensional feature space, e.g. splits or quartets feature space. In this pilot study, first we test our statistical method's ability to distinguish between sets of gene trees generated under coalescence models with species trees of varying dissimilarity. We follow our simulation results with applications to various data sets of gophers and lice, grasses and their endophytes, and different fungal genes from the same genome. A companion toolkit, {\tt Phylotree}, is provided to facilitate computational experiments.Comment: 17 pages, 6 figure