4,228 research outputs found
Bayesian Robust Tensor Factorization for Incomplete Multiway Data
We propose a generative model for robust tensor factorization in the presence
of both missing data and outliers. The objective is to explicitly infer the
underlying low-CP-rank tensor capturing the global information and a sparse
tensor capturing the local information (also considered as outliers), thus
providing the robust predictive distribution over missing entries. The
low-CP-rank tensor is modeled by multilinear interactions between multiple
latent factors on which the column sparsity is enforced by a hierarchical
prior, while the sparse tensor is modeled by a hierarchical view of Student-
distribution that associates an individual hyperparameter with each element
independently. For model learning, we develop an efficient closed-form
variational inference under a fully Bayesian treatment, which can effectively
prevent the overfitting problem and scales linearly with data size. In contrast
to existing related works, our method can perform model selection automatically
and implicitly without need of tuning parameters. More specifically, it can
discover the groundtruth of CP rank and automatically adapt the sparsity
inducing priors to various types of outliers. In addition, the tradeoff between
the low-rank approximation and the sparse representation can be optimized in
the sense of maximum model evidence. The extensive experiments and comparisons
with many state-of-the-art algorithms on both synthetic and real-world datasets
demonstrate the superiorities of our method from several perspectives.Comment: in IEEE Transactions on Neural Networks and Learning Systems, 201
Diffusion Models for Medical Image Analysis: A Comprehensive Survey
Denoising diffusion models, a class of generative models, have garnered
immense interest lately in various deep-learning problems. A diffusion
probabilistic model defines a forward diffusion stage where the input data is
gradually perturbed over several steps by adding Gaussian noise and then learns
to reverse the diffusion process to retrieve the desired noise-free data from
noisy data samples. Diffusion models are widely appreciated for their strong
mode coverage and quality of the generated samples despite their known
computational burdens. Capitalizing on the advances in computer vision, the
field of medical imaging has also observed a growing interest in diffusion
models. To help the researcher navigate this profusion, this survey intends to
provide a comprehensive overview of diffusion models in the discipline of
medical image analysis. Specifically, we introduce the solid theoretical
foundation and fundamental concepts behind diffusion models and the three
generic diffusion modelling frameworks: diffusion probabilistic models,
noise-conditioned score networks, and stochastic differential equations. Then,
we provide a systematic taxonomy of diffusion models in the medical domain and
propose a multi-perspective categorization based on their application, imaging
modality, organ of interest, and algorithms. To this end, we cover extensive
applications of diffusion models in the medical domain. Furthermore, we
emphasize the practical use case of some selected approaches, and then we
discuss the limitations of the diffusion models in the medical domain and
propose several directions to fulfill the demands of this field. Finally, we
gather the overviewed studies with their available open-source implementations
at
https://github.com/amirhossein-kz/Awesome-Diffusion-Models-in-Medical-Imaging.Comment: Second revision: including more papers and further discussion
Exploring variability in medical imaging
Although recent successes of deep learning and novel machine learning techniques improved the perfor-
mance of classification and (anomaly) detection in computer vision problems, the application of these
methods in medical imaging pipeline remains a very challenging task. One of the main reasons for this
is the amount of variability that is encountered and encapsulated in human anatomy and subsequently
reflected in medical images. This fundamental factor impacts most stages in modern medical imaging
processing pipelines.
Variability of human anatomy makes it virtually impossible to build large datasets for each disease
with labels and annotation for fully supervised machine learning. An efficient way to cope with this is
to try and learn only from normal samples. Such data is much easier to collect. A case study of such
an automatic anomaly detection system based on normative learning is presented in this work. We
present a framework for detecting fetal cardiac anomalies during ultrasound screening using generative
models, which are trained only utilising normal/healthy subjects.
However, despite the significant improvement in automatic abnormality detection systems, clinical
routine continues to rely exclusively on the contribution of overburdened medical experts to diagnosis
and localise abnormalities. Integrating human expert knowledge into the medical imaging processing
pipeline entails uncertainty which is mainly correlated with inter-observer variability. From the per-
spective of building an automated medical imaging system, it is still an open issue, to what extent
this kind of variability and the resulting uncertainty are introduced during the training of a model
and how it affects the final performance of the task. Consequently, it is very important to explore the
effect of inter-observer variability both, on the reliable estimation of model’s uncertainty, as well as
on the model’s performance in a specific machine learning task. A thorough investigation of this issue
is presented in this work by leveraging automated estimates for machine learning model uncertainty,
inter-observer variability and segmentation task performance in lung CT scan images.
Finally, a presentation of an overview of the existing anomaly detection methods in medical imaging
was attempted. This state-of-the-art survey includes both conventional pattern recognition methods
and deep learning based methods. It is one of the first literature surveys attempted in the specific
research area.Open Acces
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