34,590 research outputs found
The stability of a graph partition: A dynamics-based framework for community detection
Recent years have seen a surge of interest in the analysis of complex
networks, facilitated by the availability of relational data and the
increasingly powerful computational resources that can be employed for their
analysis. Naturally, the study of real-world systems leads to highly complex
networks and a current challenge is to extract intelligible, simplified
descriptions from the network in terms of relevant subgraphs, which can provide
insight into the structure and function of the overall system.
Sparked by seminal work by Newman and Girvan, an interesting line of research
has been devoted to investigating modular community structure in networks,
revitalising the classic problem of graph partitioning.
However, modular or community structure in networks has notoriously evaded
rigorous definition. The most accepted notion of community is perhaps that of a
group of elements which exhibit a stronger level of interaction within
themselves than with the elements outside the community. This concept has
resulted in a plethora of computational methods and heuristics for community
detection. Nevertheless a firm theoretical understanding of most of these
methods, in terms of how they operate and what they are supposed to detect, is
still lacking to date.
Here, we will develop a dynamical perspective towards community detection
enabling us to define a measure named the stability of a graph partition. It
will be shown that a number of previously ad-hoc defined heuristics for
community detection can be seen as particular cases of our method providing us
with a dynamic reinterpretation of those measures. Our dynamics-based approach
thus serves as a unifying framework to gain a deeper understanding of different
aspects and problems associated with community detection and allows us to
propose new dynamically-inspired criteria for community structure.Comment: 3 figures; published as book chapte
Laplacian Dynamics and Multiscale Modular Structure in Networks
Most methods proposed to uncover communities in complex networks rely on
their structural properties. Here we introduce the stability of a network
partition, a measure of its quality defined in terms of the statistical
properties of a dynamical process taking place on the graph. The time-scale of
the process acts as an intrinsic parameter that uncovers community structures
at different resolutions. The stability extends and unifies standard notions
for community detection: modularity and spectral partitioning can be seen as
limiting cases of our dynamic measure. Similarly, recently proposed
multi-resolution methods correspond to linearisations of the stability at short
times. The connection between community detection and Laplacian dynamics
enables us to establish dynamically motivated stability measures linked to
distinct null models. We apply our method to find multi-scale partitions for
different networks and show that the stability can be computed efficiently for
large networks with extended versions of current algorithms.Comment: New discussions on the selection of the most significant scales and
the generalisation of stability to directed network
Multi-scale Modularity in Complex Networks
We focus on the detection of communities in multi-scale networks, namely
networks made of different levels of organization and in which modules exist at
different scales. It is first shown that methods based on modularity are not
appropriate to uncover modules in empirical networks, mainly because modularity
optimization has an intrinsic bias towards partitions having a characteristic
number of modules which might not be compatible with the modular organization
of the system. We argue for the use of more flexible quality functions
incorporating a resolution parameter that allows us to reveal the natural
scales of the system. Different types of multi-resolution quality functions are
described and unified by looking at the partitioning problem from a dynamical
viewpoint. Finally, significant values of the resolution parameter are selected
by using complementary measures of robustness of the uncovered partitions. The
methods are illustrated on a benchmark and an empirical network.Comment: 8 pages, 3 figure
Flow-Based Network Analysis of the Caenorhabditis elegans Connectome
We exploit flow propagation on the directed neuronal network of the nematode C. elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which we relate to functional and anatomical constituents of its nervous system. A systematic in silico evaluation of the full set of single and double neuron ablations is used to identify deletions that induce the most severe disruptions of the multi-resolution flow structure. Such ablations are linked to functionally relevant neurons, and suggest potential candidates for further in vivo investigation. In addition, we use the directional patterns of incoming and outgoing network flows at all scales to identify flow profiles for the neurons in the connectome, without pre-imposing a priori categories. The four flow roles identified are linked to signal propagation motivated by biological input-response scenarios
Community detection and role identification in directed networks: understanding the Twitter network of the care.data debate
With the rise of social media as an important channel for the debate and discussion of public affairs, online social networks such as Twitter have become important platforms for public information and engagement by policy makers. To communicate effectively through Twitter, policy makers need to understand how influence and interest propagate within its network of users. In this chapter we use graph-theoretic methods to analyse the Twitter debate surrounding NHS Englands controversial care.data scheme. Directionality is a crucial feature of the Twitter social graph - information flows from the followed to the followers - but is often ignored in social network analyses; our methods are based on the behaviour of dynamic processes on the network and can be applied naturally to directed networks. We uncover robust communities of users and show that these communities reflect how information flows through the Twitter network. We are also able to classify users by their differing roles in directing the flow of information through the network. Our methods and results will be useful to policy makers who would like to use Twitter effectively as a communication medium
Different approaches to community detection
A precise definition of what constitutes a community in networks has remained
elusive. Consequently, network scientists have compared community detection
algorithms on benchmark networks with a particular form of community structure
and classified them based on the mathematical techniques they employ. However,
this comparison can be misleading because apparent similarities in their
mathematical machinery can disguise different reasons for why we would want to
employ community detection in the first place. Here we provide a focused review
of these different motivations that underpin community detection. This
problem-driven classification is useful in applied network science, where it is
important to select an appropriate algorithm for the given purpose. Moreover,
highlighting the different approaches to community detection also delineates
the many lines of research and points out open directions and avenues for
future research.Comment: 14 pages, 2 figures. Written as a chapter for forthcoming Advances in
network clustering and blockmodeling, and based on an extended version of The
many facets of community detection in complex networks, Appl. Netw. Sci. 2: 4
(2017) by the same author
Fast Multi-Scale Community Detection based on Local Criteria within a Multi-Threaded Algorithm
Many systems can be described using graphs, or networks. Detecting
communities in these networks can provide information about the underlying
structure and functioning of the original systems. Yet this detection is a
complex task and a large amount of work was dedicated to it in the past decade.
One important feature is that communities can be found at several scales, or
levels of resolution, indicating several levels of organisations. Therefore
solutions to the community structure may not be unique. Also networks tend to
be large and hence require efficient processing. In this work, we present a new
algorithm for the fast detection of communities across scales using a local
criterion. We exploit the local aspect of the criterion to enable parallel
computation and improve the algorithm's efficiency further. The algorithm is
tested against large generated multi-scale networks and experiments demonstrate
its efficiency and accuracy.Comment: arXiv admin note: text overlap with arXiv:1204.100
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