31,868 research outputs found
A Linked Data Approach to Sharing Workflows and Workflow Results
A bioinformatics analysis pipeline is often highly elaborate, due to the inherent complexity of biological systems and the variety and size of datasets. A digital equivalent of the ‘Materials and Methods’ section in wet laboratory publications would be highly beneficial to bioinformatics, for evaluating evidence and examining data across related experiments, while introducing the potential to find associated resources and integrate them as data and services. We present initial steps towards preserving bioinformatics ‘materials and methods’ by exploiting the workflow paradigm for capturing the design of a data analysis pipeline, and RDF to link the workflow, its component services, run-time provenance, and a personalized biological interpretation of the results. An example shows the reproduction of the unique graph of an analysis procedure, its results, provenance, and personal interpretation of a text mining experiment. It links data from Taverna, myExperiment.org, BioCatalogue.org, and ConceptWiki.org. The approach is relatively ‘light-weight’ and unobtrusive to bioinformatics users
Ontology of core data mining entities
In this article, we present OntoDM-core, an ontology of core data mining
entities. OntoDM-core defines themost essential datamining entities in a three-layered
ontological structure comprising of a specification, an implementation and an application
layer. It provides a representational framework for the description of mining
structured data, and in addition provides taxonomies of datasets, data mining tasks,
generalizations, data mining algorithms and constraints, based on the type of data.
OntoDM-core is designed to support a wide range of applications/use cases, such as
semantic annotation of data mining algorithms, datasets and results; annotation of
QSAR studies in the context of drug discovery investigations; and disambiguation of
terms in text mining. The ontology has been thoroughly assessed following the practices
in ontology engineering, is fully interoperable with many domain resources and
is easy to extend
Semantic business process management: a vision towards using semantic web services for business process management
Business process management (BPM) is the approach to manage the execution of IT-supported business operations from a business expert's view rather than from a technical perspective. However, the degree of mechanization in BPM is still very limited, creating inertia in the necessary evolution and dynamics of business processes, and BPM does not provide a truly unified view on the process space of an organization. We trace back the problem of mechanization of BPM to an ontological one, i.e. the lack of machine-accessible semantics, and argue that the modeling constructs of semantic Web services frameworks, especially WSMO, are a natural fit to creating such a representation. As a consequence, we propose to combine SWS and BPM and create one consolidated technology, which we call semantic business process management (SBPM
Learning Heterogeneous Similarity Measures for Hybrid-Recommendations in Meta-Mining
The notion of meta-mining has appeared recently and extends the traditional
meta-learning in two ways. First it does not learn meta-models that provide
support only for the learning algorithm selection task but ones that support
the whole data-mining process. In addition it abandons the so called black-box
approach to algorithm description followed in meta-learning. Now in addition to
the datasets, algorithms also have descriptors, workflows as well. For the
latter two these descriptions are semantic, describing properties of the
algorithms. With the availability of descriptors both for datasets and data
mining workflows the traditional modelling techniques followed in
meta-learning, typically based on classification and regression algorithms, are
no longer appropriate. Instead we are faced with a problem the nature of which
is much more similar to the problems that appear in recommendation systems. The
most important meta-mining requirements are that suggestions should use only
datasets and workflows descriptors and the cold-start problem, e.g. providing
workflow suggestions for new datasets.
In this paper we take a different view on the meta-mining modelling problem
and treat it as a recommender problem. In order to account for the meta-mining
specificities we derive a novel metric-based-learning recommender approach. Our
method learns two homogeneous metrics, one in the dataset and one in the
workflow space, and a heterogeneous one in the dataset-workflow space. All
learned metrics reflect similarities established from the dataset-workflow
preference matrix. We demonstrate our method on meta-mining over biological
(microarray datasets) problems. The application of our method is not limited to
the meta-mining problem, its formulations is general enough so that it can be
applied on problems with similar requirements
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Integrating information and knowledge for enterprise innovation
It has widely been accepted that enterprise integration, can be a source of socio-technical and cultural problems within organisations wishing to provide a focussed end-to-end business service. This can cause possible “straitjacketing” of business process architectures, thus suppressing responsive business re-engineering and competitive advantage for some companies. Accordingly, the current typology and emergent forms of Enterprise Resource Planning (ERP) and Enterprise Application Integration (EAI) technologies are set in the context of understanding information and knowledge integration philosophies. As such, key influences and trends in emerging IS integration choices, for end-to-end, cost-effective and flexible knowledge integration, are examined. As touch points across and outside organisations proliferate, via work-flow and relationship management-driven value innovation, aspects of knowledge refinement and knowledge integration pose challenges to maximising the potential of innovation and sustainable success, within enterprises. This is in terms of the increasing propensity for data fragmentation and the lack of effective information management, in the light of information overload. Furthermore, the nature of IS mediation which is inherent within decision making and workflow-based business processes, provides the basis for evaluation of the effects of information and knowledge integration. Hence, the authors propose a conceptual, holistic evaluation framework which encompasses these ideas. It is thus argued that such trends, and their implications regarding enterprise IS integration to engender sustainable competitive advantage, require fundamental re-thinking
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