16,793 research outputs found
Psychophysical identity and free energy
An approach to implementing variational Bayesian inference in biological
systems is considered, under which the thermodynamic free energy of a system
directly encodes its variational free energy. In the case of the brain, this
assumption places constraints on the neuronal encoding of generative and
recognition densities, in particular requiring a stochastic population code.
The resulting relationship between thermodynamic and variational free energies
is prefigured in mind-brain identity theses in philosophy and in the Gestalt
hypothesis of psychophysical isomorphism.Comment: 22 pages; published as a research article on 8/5/2020 in Journal of
the Royal Society Interfac
Penalized Estimation of Directed Acyclic Graphs From Discrete Data
Bayesian networks, with structure given by a directed acyclic graph (DAG),
are a popular class of graphical models. However, learning Bayesian networks
from discrete or categorical data is particularly challenging, due to the large
parameter space and the difficulty in searching for a sparse structure. In this
article, we develop a maximum penalized likelihood method to tackle this
problem. Instead of the commonly used multinomial distribution, we model the
conditional distribution of a node given its parents by multi-logit regression,
in which an edge is parameterized by a set of coefficient vectors with dummy
variables encoding the levels of a node. To obtain a sparse DAG, a group norm
penalty is employed, and a blockwise coordinate descent algorithm is developed
to maximize the penalized likelihood subject to the acyclicity constraint of a
DAG. When interventional data are available, our method constructs a causal
network, in which a directed edge represents a causal relation. We apply our
method to various simulated and real data sets. The results show that our
method is very competitive, compared to many existing methods, in DAG
estimation from both interventional and high-dimensional observational data.Comment: To appear in Statistics and Computin
- …