5,565 research outputs found
Control of complex networks requires both structure and dynamics
The study of network structure has uncovered signatures of the organization
of complex systems. However, there is also a need to understand how to control
them; for example, identifying strategies to revert a diseased cell to a
healthy state, or a mature cell to a pluripotent state. Two recent
methodologies suggest that the controllability of complex systems can be
predicted solely from the graph of interactions between variables, without
considering their dynamics: structural controllability and minimum dominating
sets. We demonstrate that such structure-only methods fail to characterize
controllability when dynamics are introduced. We study Boolean network
ensembles of network motifs as well as three models of biochemical regulation:
the segment polarity network in Drosophila melanogaster, the cell cycle of
budding yeast Saccharomyces cerevisiae, and the floral organ arrangement in
Arabidopsis thaliana. We demonstrate that structure-only methods both
undershoot and overshoot the number and which sets of critical variables best
control the dynamics of these models, highlighting the importance of the actual
system dynamics in determining control. Our analysis further shows that the
logic of automata transition functions, namely how canalizing they are, plays
an important role in the extent to which structure predicts dynamics.Comment: 15 pages, 6 figure
The Directed Dominating Set Problem: Generalized Leaf Removal and Belief Propagation
A minimum dominating set for a digraph (directed graph) is a smallest set of
vertices such that each vertex either belongs to this set or has at least one
parent vertex in this set. We solve this hard combinatorial optimization
problem approximately by a local algorithm of generalized leaf removal and by a
message-passing algorithm of belief propagation. These algorithms can construct
near-optimal dominating sets or even exact minimum dominating sets for random
digraphs and also for real-world digraph instances. We further develop a core
percolation theory and a replica-symmetric spin glass theory for this problem.
Our algorithmic and theoretical results may facilitate applications of
dominating sets to various network problems involving directed interactions.Comment: 11 pages, 3 figures in EPS forma
Building Damage-Resilient Dominating Sets in Complex Networks against Random and Targeted Attacks
We study the vulnerability of dominating sets against random and targeted
node removals in complex networks. While small, cost-efficient dominating sets
play a significant role in controllability and observability of these networks,
a fixed and intact network structure is always implicitly assumed. We find that
cost-efficiency of dominating sets optimized for small size alone comes at a
price of being vulnerable to damage; domination in the remaining network can be
severely disrupted, even if a small fraction of dominator nodes are lost. We
develop two new methods for finding flexible dominating sets, allowing either
adjustable overall resilience, or dominating set size, while maximizing the
dominated fraction of the remaining network after the attack. We analyze the
efficiency of each method on synthetic scale-free networks, as well as real
complex networks
- …