694 research outputs found
Solving Hard Computational Problems Efficiently: Asymptotic Parametric Complexity 3-Coloring Algorithm
Many practical problems in almost all scientific and technological
disciplines have been classified as computationally hard (NP-hard or even
NP-complete). In life sciences, combinatorial optimization problems frequently
arise in molecular biology, e.g., genome sequencing; global alignment of
multiple genomes; identifying siblings or discovery of dysregulated pathways.In
almost all of these problems, there is the need for proving a hypothesis about
certain property of an object that can be present only when it adopts some
particular admissible structure (an NP-certificate) or be absent (no admissible
structure), however, none of the standard approaches can discard the hypothesis
when no solution can be found, since none can provide a proof that there is no
admissible structure. This article presents an algorithm that introduces a
novel type of solution method to "efficiently" solve the graph 3-coloring
problem; an NP-complete problem. The proposed method provides certificates
(proofs) in both cases: present or absent, so it is possible to accept or
reject the hypothesis on the basis of a rigorous proof. It provides exact
solutions and is polynomial-time (i.e., efficient) however parametric. The only
requirement is sufficient computational power, which is controlled by the
parameter . Nevertheless, here it is proved that the
probability of requiring a value of to obtain a solution for a
random graph decreases exponentially: , making
tractable almost all problem instances. Thorough experimental analyses were
performed. The algorithm was tested on random graphs, planar graphs and
4-regular planar graphs. The obtained experimental results are in accordance
with the theoretical expected results.Comment: Working pape
Approximation Algorithms for Partially Colorable Graphs
Graph coloring problems are a central topic of study in the theory of algorithms. We study the problem of partially coloring partially colorable graphs. For alpha = alpha |V| such that the graph induced on S is k-colorable. Partial k-colorability is a more robust structural property of a graph than k-colorability. For graphs that arise in practice, partial k-colorability might be a better notion to use than k-colorability, since data arising in practice often contains various forms of noise.
We give a polynomial time algorithm that takes as input a (1 - epsilon)-partially 3-colorable graph G and a constant gamma in [epsilon, 1/10], and colors a (1 - epsilon/gamma) fraction of the vertices using O~(n^{0.25 + O(gamma^{1/2})}) colors. We also study natural semi-random families of instances of partially 3-colorable graphs and partially 2-colorable graphs, and give stronger bi-criteria approximation guarantees for these family of instances
Spotting Trees with Few Leaves
We show two results related to the Hamiltonicity and -Path algorithms in
undirected graphs by Bj\"orklund [FOCS'10], and Bj\"orklund et al., [arXiv'10].
First, we demonstrate that the technique used can be generalized to finding
some -vertex tree with leaves in an -vertex undirected graph in
time. It can be applied as a subroutine to solve the
-Internal Spanning Tree (-IST) problem in
time using polynomial space, improving upon previous algorithms for this
problem. In particular, for the first time we break the natural barrier of
. Second, we show that the iterated random bipartition employed by
the algorithm can be improved whenever the host graph admits a vertex coloring
with few colors; it can be an ordinary proper vertex coloring, a fractional
vertex coloring, or a vector coloring. In effect, we show improved bounds for
-Path and Hamiltonicity in any graph of maximum degree
or with vector chromatic number at most 8
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