INTEROP deliverable DTG 6.2 : Method repository

This deliverable presents the INTEROP method chunks repository (MCR), its architecture and provided services. It includes the definition of a reusable method chunk, its structure, illustrated with examples of method chunks stored in the repository and guidelines for method chunks definition and characterisation covering tasks TG6.2 and TG6.3 of the work plan of the task group. The main result is the definition of the structure of the method chunk repository emphasizing the link to interoperability. Interoperability is a first-class concept in the structure of the method chunk repository. It not only characterizes method chunks, i.e. procedures to solve interoperability problems, but also interoperability cases, i.e. the presentation of actual problems involving interoperability issues. TG 6 has produced three MCR prototypes. Two experiments were undertaken using the Metis system and one using ConceptBase. The task group attended a two-day intense workshop on Metis. As a result, two experiments with Metis as platform for the method chunk repository are under way and reported in this deliverable. One is realizing the structure of the MCR as specified in this report. The other is an alternative approach that serves as a benchmark and is reported in the appendix. The ConceptBase prototype utilizes the metamodel presented in this deliverable. We have analysed three cases involving various aspects of interoperability. One case is about establishing a broker platform for insurance agents, the second about linking the information systems in the public utility sector, and the third case is establishing the relation of the ATHENA Model-Driven Interoperability Framework to the goals of the MCR. The results of the TG6 have been published at the ISD conference 2006 and the ER conference 2006. Copies of the papers are included in the appendix. The report of the example session with the method chunk repository has been shifted towards deliverable TG6.3 (Tutorial of the MCR). This is the more logical place. We want to emphasize that TG6 was not only busy in drafting concepts, exploring the state of the art, and analyzing cases. We are actually experimenting with a prototype and consider this a valuable contribution to the network. As soon as the prototype is stable, knowledge about interoperability solutions can be coded in this repository and can guide designers of interoperable systems by experience knowledge

From Method Fragments to Method Services

In Method Engineering (ME) science, the key issue is the consideration of information system development methods as fragments. Numerous ME approaches have produced several definitions of method parts. Different in nature, these fragments have nevertheless some common disadvantages: lack of implementation tools, insufficient standardization effort, and so on. On the whole, the observed drawbacks are related to the shortage of usage orientation. We have proceeded to an in-depth analysis of existing method fragments within a comparison framework in order to identify their drawbacks. We suggest overcoming them by an improvement of the ?method service? concept. In this paper, the method service is defined through the service paradigm applied to a specific method fragment ? chunk. A discussion on the possibility to develop a unique representation of method fragment completes our contribution

ArrayBridge: Interweaving declarative array processing with high-performance computing

Scientists are increasingly turning to datacenter-scale computers to produce and analyze massive arrays. Despite decades of database research that extols the virtues of declarative query processing, scientists still write, debug and parallelize imperative HPC kernels even for the most mundane queries. This impedance mismatch has been partly attributed to the cumbersome data loading process; in response, the database community has proposed in situ mechanisms to access data in scientific file formats. Scientists, however, desire more than a passive access method that reads arrays from files. This paper describes ArrayBridge, a bi-directional array view mechanism for scientific file formats, that aims to make declarative array manipulations interoperable with imperative file-centric analyses. Our prototype implementation of ArrayBridge uses HDF5 as the underlying array storage library and seamlessly integrates into the SciDB open-source array database system. In addition to fast querying over external array objects, ArrayBridge produces arrays in the HDF5 file format just as easily as it can read from it. ArrayBridge also supports time travel queries from imperative kernels through the unmodified HDF5 API, and automatically deduplicates between array versions for space efficiency. Our extensive performance evaluation in NERSC, a large-scale scientific computing facility, shows that ArrayBridge exhibits statistically indistinguishable performance and I/O scalability to the native SciDB storage engine.Comment: 12 pages, 13 figure

How FAIR can you get? Image Retrieval as a Use Case to calculate FAIR Metrics

A large number of services for research data management strive to adhere to the FAIR guiding principles for scientific data management and stewardship. To evaluate these services and to indicate possible improvements, use-case-centric metrics are needed as an addendum to existing metric frameworks. The retrieval of spatially and temporally annotated images can exemplify such a use case. The prototypical implementation indicates that currently no research data repository achieves the full score. Suggestions on how to increase the score include automatic annotation based on the metadata inside the image file and support for content negotiation to retrieve the images. These and other insights can lead to an improvement of data integration workflows, resulting in a better and more FAIR approach to manage research data.Comment: This is a preprint for a paper accepted for the 2018 IEEE conferenc

A survey of simulation techniques in commerce and defence

Despite the developments in Modelling and Simulation (M&S) tools and techniques over the past years, there has been a gap in the M&S research and practice in healthcare on developing a toolkit to assist the modellers and simulation practitioners with selecting an appropriate set of techniques. This study is a preliminary step towards this goal. This paper presents some results from a systematic literature survey on applications of M&S in the commerce and defence domains that could inspire some improvements in the healthcare. Interim results show that in the commercial sector Discrete-Event Simulation (DES) has been the most widely used technique with System Dynamics (SD) in second place. However in the defence sector, SD has gained relatively more attention. SD has been found quite useful for qualitative and soft factors analysis. From both the surveys it becomes clear that there is a growing trend towards using hybrid M&S approaches