Compression of volume-surface integral equation matrices via Tucker decomposition for magnetic resonance applications

In this work, we propose a method for the compression of the coupling matrix in volume\hyp surface integral equation (VSIE) formulations. VSIE methods are used for electromagnetic analysis in magnetic resonance imaging (MRI) applications, for which the coupling matrix models the interactions between the coil and the body. We showed that these effects can be represented as independent interactions between remote elements in 3D tensor formats, and subsequently decomposed with the Tucker model. Our method can work in tandem with the adaptive cross approximation technique to provide fast solutions of VSIE problems. We demonstrated that our compression approaches can enable the use of VSIE matrices of prohibitive memory requirements, by allowing the effective use of modern graphical processing units (GPUs) to accelerate the arising matrix\hyp vector products. This is critical to enable numerical MRI simulations at clinical voxel resolutions in a feasible computation time. In this paper, we demonstrate that the VSIE matrix\hyp vector products needed to calculate the electromagnetic field produced by an MRI coil inside a numerical body model with $1$ mm$^3$ voxel resolution, could be performed in $\sim 33$ seconds in a GPU, after compressing the associated coupling matrix from $\sim 80$ TB to $\sim 43$ MB.Comment: 13 pages, 11 figure

On the Compression of Translation Operator Tensors in FMM-FFT-Accelerated SIE Simulators via Tensor Decompositions

Tensor decomposition methodologies are proposed to reduce the memory requirement of translation operator tensors arising in the fast multipole method-fast Fourier transform (FMM-FFT)-accelerated surface integral equation (SIE) simulators. These methodologies leverage Tucker, hierarchical Tucker (H-Tucker), and tensor train (TT) decompositions to compress the FFT'ed translation operator tensors stored in three-dimensional (3D) and four-dimensional (4D) array formats. Extensive numerical tests are performed to demonstrate the memory saving achieved by and computational overhead introduced by these methodologies for different simulation parameters. Numerical results show that the H-Tucker-based methodology for 4D array format yields the maximum memory saving while Tucker-based methodology for 3D array format introduces the minimum computational overhead. For many practical scenarios, all methodologies yield a significant reduction in the memory requirement of translation operator tensors while imposing negligible/acceptable computational overhead

FlashFFTConv: Efficient Convolutions for Long Sequences with Tensor Cores

Convolution models with long filters have demonstrated state-of-the-art reasoning abilities in many long-sequence tasks but lag behind the most optimized Transformers in wall-clock time. A major bottleneck is the Fast Fourier Transform (FFT)--which allows long convolutions to run in $O(N logN)$ time in sequence length $N$ but has poor hardware utilization. In this paper, we study how to optimize the FFT convolution. We find two key bottlenecks: the FFT does not effectively use specialized matrix multiply units, and it incurs expensive I/O between layers of the memory hierarchy. In response, we propose FlashFFTConv. FlashFFTConv uses a matrix decomposition that computes the FFT using matrix multiply units and enables kernel fusion for long sequences, reducing I/O. We also present two sparse convolution algorithms--1) partial convolutions and 2) frequency-sparse convolutions--which can be implemented simply by skipping blocks in the matrix decomposition, enabling further opportunities for memory and compute savings. FlashFFTConv speeds up exact FFT convolutions by up to 7.93$\times$ over PyTorch and achieves up to 4.4$\times$ speedup end-to-end. Given the same compute budget, FlashFFTConv allows Hyena-GPT-s to achieve 2.3 points better perplexity on the PILE and M2-BERT-base to achieve 3.3 points higher GLUE score--matching models with twice the parameter count. FlashFFTConv also achieves 96.1% accuracy on Path-512, a high-resolution vision task where no model had previously achieved better than 50%. Furthermore, partial convolutions enable longer-sequence models--yielding the first DNA model that can process the longest human genes (2.3M base pairs)--and frequency-sparse convolutions speed up pretrained models while maintaining or improving model quality

A review of nonlinear FFT-based computational homogenization methods

Since their inception, computational homogenization methods based on the fast Fourier transform (FFT) have grown in popularity, establishing themselves as a powerful tool applicable to complex, digitized microstructures. At the same time, the understanding of the underlying principles has grown, in terms of both discretization schemes and solution methods, leading to improvements of the original approach and extending the applications. This article provides a condensed overview of results scattered throughout the literature and guides the reader to the current state of the art in nonlinear computational homogenization methods using the fast Fourier transform