Mediation of foundation ontology based knowledge sources

Ontologies are helpful in giving interoperable structures to sources of knowledge and information. This interoperability, however, is greatly hindered by the heterogeneity of independently developed ontologies which in turn increases the requirements for mediation systems to reconcile the differences. A core concepts ontology for a certain domain contained by a foundation ontology can be used to alleviate this problem and to facilitate the reconciliation efforts. Possible differences in the use of concepts from the core concepts to model entities in domain ontologies can be prevented by binding the domain ontology developers to some rules. These rules can be particularly useful for domain ontologies requiring some kind of traceability of their concepts in the foundation ontology. The mediation system can then use this traceability to establish similarities between two ontologies. Software applications, like the one explained in this paper, can then be developed to perform the mediation task automatically and accurately

An Ontology Based Method to Solve Query Identifier Heterogeneity in Post-Genomic Clinical Trials

The increasing amount of information available for biomedical research has led to issues related to knowledge discovery in large collections of data. Moreover, Information Retrieval techniques must consider heterogeneities present in databases, initially belonging to different domains—e.g. clinical and genetic data. One of the goals, among others, of the ACGT European is to provide seamless and homogeneous access to integrated databases. In this work, we describe an approach to overcome heterogeneities in identifiers inside queries. We present an ontology classifying the most common identifier semantic heterogeneities, and a service that makes use of it to cope with the problem using the described approach. Finally, we illustrate the solution by analysing a set of real queries

Applications of the ACGT Master Ontology on Cancer

In this paper we present applications of the ACGT Master Ontology (MO) which is a new terminology resource for a transnational network providing data exchange in oncology, emphasizing the integration of both clinical and molecular data. The development of a new ontology was necessary due to problems with existing biomedical ontologies in oncology. The ACGT MO is a test case for the application of best practices in ontology development. This paper provides an overview of the application of the ontology within the ACGT project thus far

Geospatial data integration with Semantic Web services: the eMerges approach

Geographic space still lacks the semantics allowing a unified view of spatial data. Indeed, as a unique but all encompassing domain, it presents specificities that geospatial applications are still unable to handle. Moreover, to be useful, new spatial applications need to match human cognitive abilities of spatial representation and reasoning. In this context, eMerges, an approach to geospatial data integration based on Semantic Web Services (SWS), allows the unified representation and manipulation of heterogeneous spatial data sources. eMerges provides this integration by mediating legacy spatial data sources to high-level spatial ontologies through SWS and by presenting for each object context dependent affordances. This generic approach is applied here in the context of an emergency management use case developed in collaboration with emergency planners of public agencies

Mediation of semantic web services in IRS-III

Business applications composed of heterogeneous distributed components or Web services need mediation to resolve data and process mismatches at runtime. This paper describes mediation in IRS-III, a framework and platform for developing WSMO-based Semantic Web Services. We present our approach to mediation within Semantic Web Services and highlight the role of WSMO mediator types when solving mismatches at the semantic level between a service requester and a service provider. We describe the components of our mediation framework and how it can handle data, goal and process mediation during the activities of selection, composition and invocation of Semantic Web Services

Identification of Design Principles

This report identifies those design principles for a (possibly new) query and transformation language for the Web supporting inference that are considered essential. Based upon these design principles an initial strawman is selected. Scenarios for querying the Semantic Web illustrate the design principles and their reflection in the initial strawman, i.e., a first draft of the query language to be designed and implemented by the REWERSE working group I4

Approaches to Semantic Web Services: An Overview and Comparison

Abstract. The next Web generation promises to deliver Semantic Web Services (SWS); services that are self-described and amenable to automated discovery, composition and invocation. A prerequisite to this, however, is the emergence and evolution of the Semantic Web, which provides the infrastructure for the semantic interoperability of Web Services. Web Services will be augmented with rich formal descriptions of their capabilities, such that they can be utilized by applications or other services without human assistance or highly constrained agreements on interfaces or protocols. Thus, Semantic Web Services have the potential to change the way knowledge and business services are consumed and provided on the Web. In this paper, we survey the state of the art of current enabling technologies for Semantic Web Services. In addition, we characterize the infrastructure of Semantic Web Services along three orthogonal dimensions: activities, architecture and service ontology. Further, we examine and contrast three current approaches to SWS according to the proposed dimensions