473,198 research outputs found
Causality, Information and Biological Computation: An algorithmic software approach to life, disease and the immune system
Biology has taken strong steps towards becoming a computer science aiming at
reprogramming nature after the realisation that nature herself has reprogrammed
organisms by harnessing the power of natural selection and the digital
prescriptive nature of replicating DNA. Here we further unpack ideas related to
computability, algorithmic information theory and software engineering, in the
context of the extent to which biology can be (re)programmed, and with how we
may go about doing so in a more systematic way with all the tools and concepts
offered by theoretical computer science in a translation exercise from
computing to molecular biology and back. These concepts provide a means to a
hierarchical organization thereby blurring previously clear-cut lines between
concepts like matter and life, or between tumour types that are otherwise taken
as different and may not have however a different cause. This does not diminish
the properties of life or make its components and functions less interesting.
On the contrary, this approach makes for a more encompassing and integrated
view of nature, one that subsumes observer and observed within the same system,
and can generate new perspectives and tools with which to view complex diseases
like cancer, approaching them afresh from a software-engineering viewpoint that
casts evolution in the role of programmer, cells as computing machines, DNA and
genes as instructions and computer programs, viruses as hacking devices, the
immune system as a software debugging tool, and diseases as an
information-theoretic battlefield where all these forces deploy. We show how
information theory and algorithmic programming may explain fundamental
mechanisms of life and death.Comment: 30 pages, 8 figures. Invited chapter contribution to Information and
Causality: From Matter to Life. Sara I. Walker, Paul C.W. Davies and George
Ellis (eds.), Cambridge University Pres
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Similarities, challenges and opportunities of wikipedia content and open source projects
Copyright @ 2012 John Wiley & Sons, Ltd.Several years of research and evidence have demonstrated that Open Source Software (OSS) portals often contain a large amount of software projects that simply do not evolve, developed by relatively small communities, struggling to attract a sustained number of contributors. These portals have started to
increasingly act as a storage for abandoned projects, and researchers and practitioners should try and point out how to take advantage of such content. Similarly, other online content portals (like Wikipedia) could be harvested for valuable content. In this paper we argue that, even with differences in the requested expertise, many projects reliant on content and contributions by users undergo a similar evolution, and follow similar patterns: when a project fails to attract contributors, it appears to be not evolving, or abandoned. Far from a negative finding, even those projects could provide valuable content that should be harvested and identified based on common characteristics: by using the attributes of âusefulnessâ and âmodularityâ we isolate valuable content in both Wikipedia pages and OSS projects
The Evolution of Wikipedia's Norm Network
Social norms have traditionally been difficult to quantify. In any particular
society, their sheer number and complex interdependencies often limit a
system-level analysis. One exception is that of the network of norms that
sustain the online Wikipedia community. We study the fifteen-year evolution of
this network using the interconnected set of pages that establish, describe,
and interpret the community's norms. Despite Wikipedia's reputation for
\textit{ad hoc} governance, we find that its normative evolution is highly
conservative. The earliest users create norms that both dominate the network
and persist over time. These core norms govern both content and interpersonal
interactions using abstract principles such as neutrality, verifiability, and
assume good faith. As the network grows, norm neighborhoods decouple
topologically from each other, while increasing in semantic coherence. Taken
together, these results suggest that the evolution of Wikipedia's norm network
is akin to bureaucratic systems that predate the information age.Comment: 22 pages, 9 figures. Matches published version. Data available at
http://bit.ly/wiki_nor
Automatic detection of accommodation steps as an indicator of knowledge maturing
Jointly working on shared digital artifacts â such as wikis â is a well-tried method of developing knowledge collectively within a group or organization. Our assumption is that such knowledge maturing is an accommodation process that can be measured by taking the writing process itself into account. This paper describes the development of a tool that detects accommodation automatically with the help of machine learning algorithms. We applied a software framework for task detection to the automatic identification of accommodation processes within a wiki. To set up the learning algorithms and test its performance, we conducted an empirical study, in which participants had to contribute to a wiki and, at the same time, identify their own tasks. Two domain experts evaluated the participantsâ micro-tasks with regard to accommodation. We then applied an ontology-based task detection approach that identified accommodation with a rate of 79.12%. The potential use of our tool for measuring knowledge maturing online is discussed
Distilling Information Reliability and Source Trustworthiness from Digital Traces
Online knowledge repositories typically rely on their users or dedicated
editors to evaluate the reliability of their content. These evaluations can be
viewed as noisy measurements of both information reliability and information
source trustworthiness. Can we leverage these noisy evaluations, often biased,
to distill a robust, unbiased and interpretable measure of both notions?
In this paper, we argue that the temporal traces left by these noisy
evaluations give cues on the reliability of the information and the
trustworthiness of the sources. Then, we propose a temporal point process
modeling framework that links these temporal traces to robust, unbiased and
interpretable notions of information reliability and source trustworthiness.
Furthermore, we develop an efficient convex optimization procedure to learn the
parameters of the model from historical traces. Experiments on real-world data
gathered from Wikipedia and Stack Overflow show that our modeling framework
accurately predicts evaluation events, provides an interpretable measure of
information reliability and source trustworthiness, and yields interesting
insights about real-world events.Comment: Accepted at 26th World Wide Web conference (WWW-17
Resource Letter: Gravitational Lensing
This Resource Letter provides a guide to a selection of the literature on
gravitational lensing and its applications. Journal articles, books, popular
articles, and websites are cited for the following topics: foundations of
gravitational lensing, foundations of cosmology, history of gravitational
lensing, strong lensing, weak lensing, and microlensing.Comment: Resource Letter, 2012, in press
(http://ajp.dickinson.edu/Readers/resLetters.html); 21 pages, no figures;
diigo version available at
http://groups.diigo.com/group/gravitational-lensin
Proceedings of the ECCS 2005 satellite workshop: embracing complexity in design - Paris 17 November 2005
Embracing complexity in design is one of the critical issues and challenges of the 21st century. As the realization grows that design activities and artefacts display properties associated with complex adaptive systems, so grows the need to use complexity concepts and methods to understand these properties and inform the design of better artifacts. It is a great challenge because complexity science represents an epistemological and methodological swift that promises a holistic approach in the understanding and operational support of design. But design is also a major contributor in complexity research. Design science is concerned with problems that are fundamental in the sciences in general and complexity sciences in particular. For instance, design has been perceived and studied as a ubiquitous activity inherent in every human activity, as the art of generating hypotheses, as a type of experiment, or as a creative co-evolutionary process. Design science and its established approaches and practices can be a great source for advancement and innovation in complexity science. These proceedings are the result of a workshop organized as part of the activities of a UK government AHRB/EPSRC funded research cluster called Embracing Complexity in Design (www.complexityanddesign.net) and the European Conference in Complex Systems (complexsystems.lri.fr). Embracing complexity in design is one of the critical issues and challenges of the 21st century. As the realization grows that design activities and artefacts display properties associated with complex adaptive systems, so grows the need to use complexity concepts and methods to understand these properties and inform the design of better artifacts. It is a great challenge because complexity science represents an epistemological and methodological swift that promises a holistic approach in the understanding and operational support of design. But design is also a major contributor in complexity research. Design science is concerned with problems that are fundamental in the sciences in general and complexity sciences in particular. For instance, design has been perceived and studied as a ubiquitous activity inherent in every human activity, as the art of generating hypotheses, as a type of experiment, or as a creative co-evolutionary process. Design science and its established approaches and practices can be a great source for advancement and innovation in complexity science. These proceedings are the result of a workshop organized as part of the activities of a UK government AHRB/EPSRC funded research cluster called Embracing Complexity in Design (www.complexityanddesign.net) and the European Conference in Complex Systems (complexsystems.lri.fr)
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