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A quantitative narrative on movement, disease and patch exploitation in nesting agent groups
Abstract Animal relocation data has recently become considerably more ubiquitous, finely structured (collection frequencies measured in minutes) and co-variate rich (physiology of individuals, environmental and landscape information, and accelerometer data). To better understand the impacts of ecological interactions, individual movement and disease on global change ecology, including wildlife management and conservation, it is important to have simulators that will provide demographic, movement, and epidemiology null models against which to compare patterns observed in empirical systems. Such models may then be used to develop quantitative narratives that enhance our intuition and understanding of the relationship between population structure and generative processes: in essence, along with empirical and experimental narratives, quantitative narratives are used to advance ecological epistemology. Here we describe a simulator that accounts for the influence of consumer-resource interactions, existence of social groups anchored around a central location, territoriality, group-switching behavior, and disease dynamics on population size. We use this simulator to develop new and reinforce existing quantitative narratives and point out areas for future study. Author summary The health and viability of species are of considerable concern to all nature lovers. Population models are central to our efforts to assess the numerical and ecological status of species and threats posed by climate change. Models, however, are crude caricatures of complex ecological systems. So how do we construct reliable assessment models able to capture processes essential to predicating the impacts of global change on population viability without getting tied up in their vast complexities? We broach this question and demonstrate how models focusing at the level of the individual (i.e., agent-based models) are tools for developing robust, narratives to augment narratives arising purely from empirical data sources and experimental outcomes. We do this in the context of nesting social groups, foraging for food, while exhibiting territoriality and group-switching behavior; and, we evaluate the impact of disease on the viability of such populations
Flexible couplings: diffusing neuromodulators and adaptive robotics
Recent years have seen the discovery of freely diffusing gaseous neurotransmitters, such as nitric oxide (NO), in biological nervous systems. A type of artificial neural network (ANN) inspired by such gaseous signaling, the GasNet, has previously been shown to be more evolvable than traditional ANNs when used as an artificial nervous system in an evolutionary robotics setting, where evolvability means consistent speed to very good solutionsÂżhere, appropriate sensorimotor behavior-generating systems. We present two new versions of the GasNet, which take further inspiration from the properties of neuronal gaseous signaling. The plexus model is inspired by the extraordinary NO-producing cortical plexus structure of neural fibers and the properties of the diffusing NO signal it generates. The receptor model is inspired by the mediating action of neurotransmitter receptors. Both models are shown to significantly further improve evolvability. We describe a series of analyses suggesting that the reasons for the increase in evolvability are related to the flexible loose coupling of distinct signaling mechanisms, one ÂżchemicalÂż and one Âżelectrical.
The Value of Moderate Obsession: Insights from a New Model of Organizational Search
This study presents a new model of search on a “rugged landscape,” which employs modeling techniques from fractal geometry rather than the now-familiar NK modeling technique. In our simulations,firms search locally in a two-dimensional fitness landscape, choosing moves in a way that responds both to local payoff considerations and to a more global sense of opportunity represented by a firm-specific “preferred direction.” The latter concept provides a very simple device for introducing cognitive or motivational considerations into the formal account of search behavior, alongside payoff considerations. After describing the objectives and the structure of the model, we report a first experiment which explores how the ruggedness of the landscape affects the interplay of local payoff and cognitive considerations (preferred direction) in search. We show that an intermediate search strategy, combining the guidance of local search with a moderate level of non-local “obsession,” is distinctly advantageous in searching a rugged landscape. We also explore the effects of other considerations, including the objective validity of the preferred direction and the degree of dispersion of firm strategies. We conclude by noting available features of the model that are not exercised in this experiment. Given the inherent flexibility of the model, the range of questions that might potentially be explored is extremely large.Rugged Landscapes; Local Search; Cognition; Obsession; Fractal Geometry
Genetic Algorithms in Time-Dependent Environments
The influence of time-dependent fitnesses on the infinite population dynamics
of simple genetic algorithms (without crossover) is analyzed. Based on general
arguments, a schematic phase diagram is constructed that allows one to
characterize the asymptotic states in dependence on the mutation rate and the
time scale of changes. Furthermore, the notion of regular changes is raised for
which the population can be shown to converge towards a generalized
quasispecies. Based on this, error thresholds and an optimal mutation rate are
approximately calculated for a generational genetic algorithm with a moving
needle-in-the-haystack landscape. The so found phase diagram is fully
consistent with our general considerations.Comment: 24 pages, 14 figures, submitted to the 2nd EvoNet Summerschoo
The Evolutionary Unfolding of Complexity
We analyze the population dynamics of a broad class of fitness functions that
exhibit epochal evolution---a dynamical behavior, commonly observed in both
natural and artificial evolutionary processes, in which long periods of stasis
in an evolving population are punctuated by sudden bursts of change. Our
approach---statistical dynamics---combines methods from both statistical
mechanics and dynamical systems theory in a way that offers an alternative to
current ``landscape'' models of evolutionary optimization. We describe the
population dynamics on the macroscopic level of fitness classes or phenotype
subbasins, while averaging out the genotypic variation that is consistent with
a macroscopic state. Metastability in epochal evolution occurs solely at the
macroscopic level of the fitness distribution. While a balance between
selection and mutation maintains a quasistationary distribution of fitness,
individuals diffuse randomly through selectively neutral subbasins in genotype
space. Sudden innovations occur when, through this diffusion, a genotypic
portal is discovered that connects to a new subbasin of higher fitness
genotypes. In this way, we identify innovations with the unfolding and
stabilization of a new dimension in the macroscopic state space. The
architectural view of subbasins and portals in genotype space clarifies how
frozen accidents and the resulting phenotypic constraints guide the evolution
to higher complexity.Comment: 28 pages, 5 figure
Error Thresholds on Dynamic Fittness-Landscapes
In this paper we investigate error-thresholds on dynamics fitness-landscapes.
We show that there exists both lower and an upper threshold, representing
limits to the copying fidelity of simple replicators. The lower bound can be
expressed as a correction term to the error-threshold present on a static
landscape. The upper error-threshold is a new limit that only exists on dynamic
fitness-landscapes. We also show that for long genomes on highly dynamic
fitness-landscapes there exists a lower bound on the selection pressure needed
to enable effective selection of genomes with superior fitness independent of
mutation rates, i.e., there are distinct limits to the evolutionary parameters
in dynamic environments.Comment: 5 page
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