Scalable Kernelization for Maximum Independent Sets

The most efficient algorithms for finding maximum independent sets in both theory and practice use reduction rules to obtain a much smaller problem instance called a kernel. The kernel can then be solved quickly using exact or heuristic algorithms---or by repeatedly kernelizing recursively in the branch-and-reduce paradigm. It is of critical importance for these algorithms that kernelization is fast and returns a small kernel. Current algorithms are either slow but produce a small kernel, or fast and give a large kernel. We attempt to accomplish both of these goals simultaneously, by giving an efficient parallel kernelization algorithm based on graph partitioning and parallel bipartite maximum matching. We combine our parallelization techniques with two techniques to accelerate kernelization further: dependency checking that prunes reductions that cannot be applied, and reduction tracking that allows us to stop kernelization when reductions become less fruitful. Our algorithm produces kernels that are orders of magnitude smaller than the fastest kernelization methods, while having a similar execution time. Furthermore, our algorithm is able to compute kernels with size comparable to the smallest known kernels, but up to two orders of magnitude faster than previously possible. Finally, we show that our kernelization algorithm can be used to accelerate existing state-of-the-art heuristic algorithms, allowing us to find larger independent sets faster on large real-world networks and synthetic instances.Comment: Extended versio

A Unified Coded Deep Neural Network Training Strategy Based on Generalized PolyDot Codes for Matrix Multiplication

This paper has two contributions. First, we propose a novel coded matrix multiplication technique called Generalized PolyDot codes that advances on existing methods for coded matrix multiplication under storage and communication constraints. This technique uses "garbage alignment," i.e., aligning computations in coded computing that are not a part of the desired output. Generalized PolyDot codes bridge between Polynomial codes and MatDot codes, trading off between recovery threshold and communication costs. Second, we demonstrate that Generalized PolyDot can be used for training large Deep Neural Networks (DNNs) on unreliable nodes prone to soft-errors. This requires us to address three additional challenges: (i) prohibitively large overhead of coding the weight matrices in each layer of the DNN at each iteration; (ii) nonlinear operations during training, which are incompatible with linear coding; and (iii) not assuming presence of an error-free master node, requiring us to architect a fully decentralized implementation without any "single point of failure." We allow all primary DNN training steps, namely, matrix multiplication, nonlinear activation, Hadamard product, and update steps as well as the encoding/decoding to be error-prone. We consider the case of mini-batch size $B=1$, as well as $B>1$, leveraging coded matrix-vector products, and matrix-matrix products respectively. The problem of DNN training under soft-errors also motivates an interesting, probabilistic error model under which a real number $(P,Q)$ MDS code is shown to correct $P-Q-1$ errors with probability $1$ as compared to $\lfloor \frac{P-Q}{2} \rfloor$ for the more conventional, adversarial error model. We also demonstrate that our proposed strategy can provide unbounded gains in error tolerance over a competing replication strategy and a preliminary MDS-code-based strategy for both these error models.Comment: Presented in part at the IEEE International Symposium on Information Theory 2018 (Submission Date: Jan 12 2018); Currently under review at the IEEE Transactions on Information Theor