Performance comparison between Java and JNI for optimal implementation of computational micro-kernels

General purpose CPUs used in high performance computing (HPC) support a vector instruction set and an out-of-order engine dedicated to increase the instruction level parallelism. Hence, related optimizations are currently critical to improve the performance of applications requiring numerical computation. Moreover, the use of a Java run-time environment such as the HotSpot Java Virtual Machine (JVM) in high performance computing is a promising alternative. It benefits from its programming flexibility, productivity and the performance is ensured by the Just-In-Time (JIT) compiler. Though, the JIT compiler suffers from two main drawbacks. First, the JIT is a black box for developers. We have no control over the generated code nor any feedback from its optimization phases like vectorization. Secondly, the time constraint narrows down the degree of optimization compared to static compilers like GCC or LLVM. So, it is compelling to use statically compiled code since it benefits from additional optimization reducing performance bottlenecks. Java enables to call native code from dynamic libraries through the Java Native Interface (JNI). Nevertheless, JNI methods are not inlined and require an additional cost to be invoked compared to Java ones. Therefore, to benefit from better static optimization, this call overhead must be leveraged by the amount of computation performed at each JNI invocation. In this paper we tackle this problem and we propose to do this analysis for a set of micro-kernels. Our goal is to select the most efficient implementation considering the amount of computation defined by the calling context. We also investigate the impact on performance of several different optimization schemes which are vectorization, out-of-order optimization, data alignment, method inlining and the use of native memory for JNI methods.Comment: Part of ADAPT Workshop proceedings, 2015 (arXiv:1412.2347

SAFE: Self-Attentive Function Embeddings for Binary Similarity

The binary similarity problem consists in determining if two functions are similar by only considering their compiled form. Advanced techniques for binary similarity recently gained momentum as they can be applied in several fields, such as copyright disputes, malware analysis, vulnerability detection, etc., and thus have an immediate practical impact. Current solutions compare functions by first transforming their binary code in multi-dimensional vector representations (embeddings), and then comparing vectors through simple and efficient geometric operations. However, embeddings are usually derived from binary code using manual feature extraction, that may fail in considering important function characteristics, or may consider features that are not important for the binary similarity problem. In this paper we propose SAFE, a novel architecture for the embedding of functions based on a self-attentive neural network. SAFE works directly on disassembled binary functions, does not require manual feature extraction, is computationally more efficient than existing solutions (i.e., it does not incur in the computational overhead of building or manipulating control flow graphs), and is more general as it works on stripped binaries and on multiple architectures. We report the results from a quantitative and qualitative analysis that show how SAFE provides a noticeable performance improvement with respect to previous solutions. Furthermore, we show how clusters of our embedding vectors are closely related to the semantic of the implemented algorithms, paving the way for further interesting applications (e.g. semantic-based binary function search).Comment: Published in International Conference on Detection of Intrusions and Malware, and Vulnerability Assessment (DIMVA) 201