Compiler and runtime support for shared memory parallelization of data mining algorithms

Abstract. Data mining techniques focus on finding novel and useful patterns or models from large datasets. Because of the volume of the data to be analyzed, the amount of computation involved, and the need for rapid or even interactive analysis, data mining applications require the use of parallel machines. We have been developing compiler and runtime support for developing scalable implementations of data mining algorithms. Our work encompasses shared memory parallelization, distributed memory parallelization, and optimizations for processing disk-resident datasets. In this paper, we focus on compiler and runtime support for shared memory parallelization of data mining algorithms. We have developed a set of parallelization techniques that apply across algorithms for a variety of mining tasks. We describe the interface of the middleware where these techniques are implemented. Then, we present compiler techniques for translating data parallel code to the middleware specification. Finally, we present a brief evaluation of our compiler using apriori association mining and k-means clustering.

Aspect oriented pluggable support for parallel computing

In this paper, we present an approach to develop parallel applications based on aspect oriented programming. We propose a collection of aspects to implement group communication mechanisms on parallel applications. In our approach, parallelisation code is developed by composing the collection into the application core functionality. The approach requires fewer changes to sequential applications to parallelise the core functionality than current alternatives and yields more modular code. The paper presents the collection and shows how the aspects can be used to develop efficient parallel applicationsFundação para a Ciência e a Tecnologia (FCT) - PPC-VM (Portable Parallel Computing based on Virtual Machines) Project POSI/CHS/47158/2002; SOFTAS (POSI/EIA/60189/2004).Fundo Europeu de Desenvolvimento Regional (FEDER)

Run-time optimization of adaptive irregular applications

Compared to traditional compile-time optimization, run-time optimization could offer significant performance improvements when parallelizing and optimizing adaptive irregular applications, because it performs program analysis and adaptive optimizations during program execution. Run-time techniques can succeed where static techniques fail because they exploit the characteristics of input data, programs' dynamic behaviors, and the underneath execution environment. When optimizing adaptive irregular applications for parallel execution, a common observation is that the effectiveness of the optimizing transformations depends on programs' input data and their dynamic phases. This dissertation presents a set of run-time optimization techniques that match the characteristics of programs' dynamic memory access patterns and the appropriate optimization (parallelization) transformations. First, we present a general adaptive algorithm selection framework to automatically and adaptively select at run-time the best performing, functionally equivalent algorithm for each of its execution instances. The selection process is based on off-line automatically generated prediction models and characteristics (collected and analyzed dynamically) of the algorithm's input data, In this dissertation, we specialize this framework for automatic selection of reduction algorithms. In this research, we have identified a small set of machine independent high-level characterization parameters and then we deployed an off-line, systematic experiment process to generate prediction models. These models, in turn, match the parameters to the best optimization transformations for a given machine. The technique has been evaluated thoroughly in terms of applications, platforms, and programs' dynamic behaviors. Specifically, for the reduction algorithm selection, the selected performance is within 2% of optimal performance and on average is 60% better than "Replicated Buffer," the default parallel reduction algorithm specified by OpenMP standard. To reduce the overhead of speculative run-time parallelization, we have developed an adaptive run-time parallelization technique that dynamically chooses effcient shadow structures to record a program's dynamic memory access patterns for parallelization. This technique complements the original speculative run-time parallelization technique, the LRPD test, in parallelizing loops with sparse memory accesses. The techniques presented in this dissertation have been implemented in an optimizing research compiler and can be viewed as effective building blocks for comprehensive run-time optimization systems, e.g., feedback-directed optimization systems and dynamic compilation systems

A Framework For Parallelizing Sampling-Based Motion Planning Algorithms

Motion planning is the problem of finding a valid path for a robot from a start position to a goal position. It has many uses such as protein folding and animation. However, motion planning can be slow and take a long time in difficult environments. Parallelization can be used to speed up this process. This research focused on the implementation of a framework for the implementation and testing of Parallel Motion Planning algorithms. Additionally, two methods were implemented to test this framework. The results showed a reasonable amount of speed-up and coverage and connectivity similar to sequential methods

A key-based adaptive transactional memory executor

Software transactional memory systems enable a programmer to easily write concurrent data structures such as lists, trees, hashtables, and graphs, where nonconflicting operations proceed in parallel. Many of these structures take the abstract form of a dictionary, in which each transaction is associated with a search key. By regrouping transactions based on their keys, one may improve locality and reduce conflicts among parallel transactions. In this paper, we present an executor that partitions transactions among available processors. Our keybased adaptive partitioning monitors incoming transactions, estimates the probability distribution of their keys, and adaptively determines the (usually nonuniform) partitions. By comparing the adaptive partitioning with uniform partitioning and round-robin keyless partitioning on a 16-processor SunFire 6800 machine, we demonstrate that key-based adaptive partitioning significantly improves the throughput of finegrained parallel operations on concurrent data structures