Domain Walls and Anchoring Transitions Mimicking Nematic Biaxiality in the Oxadiazole Bent-Core Liquid Crystal C7

We investigate the origin of secondary disclinations that were recently described as a new evidence of a biaxial nematic phase in an oxadiazole bent-core thermotropic liquid crystal C7. With an assortment of optical techniques such as polarizing optical microscopy, LC PolScope, and fluorescence confocal polarizing microscopy, we demonstrate that the secondary disclinations represent non-singular domain walls formed in an uniaxial nematic during the surface anchoring transition, in which surface orientation of the director changes from tangential (parallel to the bounding plates) to tilted. Each domain wall separates two regions with the director tilted in opposite azimuthal directions. At the centre of the wall, the director remains parallel to the bonding plates. The domain walls can be easily removed by applying a modest electric field. The anchoring transition is explained by the balance of (a) the intrinsic perpendicular surface anchoring produced by the polyimide aligning layer and (b) tangential alignment caused by ionic impurities forming electric double layers. The model is supported by the fact that the temperature of the tangential-tilted anchoring transition decreases as the cell thickness increases and as the concentration of ionic species (added salt) increases. We also demonstrate that the surface alignment is strongly affected by thermal degradation of the samples. The study shows that C7 exhibits only a uniaxial nematic phase and demonstrate yet another mechanism (formation of secondary disclinations) by which a uniaxial nematic can mimic a biaxial nematic behaviour.Comment: 21 pages, 9 Figures, 1 Tabl

Filamentous phages as building blocks for reconfigurable and hierarchical self-assembly

Filamentous bacteriophages such as fd-like viruses are monodisperse rod-like colloids that have well defined properties: diameter, length, rigidity, charge and chirality. Engineering those viruses leads to a library of colloidal rods which can be used as building blocks for reconfigurable and hierarchical self-assembly. Their condensation in aqueous solution \th{with additive polymers which act as depletants to induce} attraction between the rods leads to a myriad of fluid-like micronic structures ranging from isotropic/nematic droplets, colloid membranes, achiral membrane seeds, twisted ribbons, $\pi$-wall, pores, colloidal skyrmions, M\"obius anchors, scallop membranes to membrane rafts. Those structures and the way they shape shift not only shed light on the role of entropy, chiral frustration and topology in soft matter but it also mimics many structures encountered in different fields of science. On one hand, filamentous phages being an experimental realization of colloidal hard rods, their condensation mediated by depletion interactions constitutes a blueprint for self-assembly of rod-like particles and provides fundamental foundation for bio- or material oriented applications. On the other hand, the chiral properties of the viruses restrict the generalities of some results but vastly broaden the self-assembly possibilities

Polarized light imaging of birefringence and diattenuation at highresolution and high sensitivity

Polarized light microscopy provides unique opportunities for analyzing the molecular order in man-made and natural materials, including biological structures inside living cells, tissues, and whole organisms. 20 years ago, the LC-PolScope was introduced as a modern version of the traditional polarizing microscope enhanced by liquid crystal devices for the control of polarization, and by electronic imaging and digital image processing for fast and comprehensive image acquisition and analysis. The LC- PolScope is commonly used for birefringence imaging, analyzing the spatial and temporal variations of the differential phase delay in ordered and transparent materials. Here we describe an alternative use of the LC-PolScope for imaging the polarization dependent transmittance of dichroic materials. We explain the minor changes needed to convert the instrument between the two imaging modes, discuss the relationship between the quantities measured with either instrument, and touch on the physical connection between refractive index, birefringence, transmittance, diattenuation, and dichroism.Comment: 21 pages, 5 figures, accepted for publication in Journal of Optic

Molecular engineering of chiral colloidal liquid crystals using DNA origami

Establishing precise control over the shape and the interactions of the microscopic building blocks is essential for design of macroscopic soft materials with novel structural, optical and mechanical properties. Here, we demonstrate robust assembly of DNA origami filaments into cholesteric liquid crystals, 1D supramolecular twisted ribbons and 2D colloidal membranes. The exquisite control afforded by the DNA origami technology establishes a quantitative relationship between the microscopic filament structure and the macroscopic cholesteric pitch. Furthermore, it also enables robust assembly of 1D twisted ribbons, which behave as effective supramolecular polymers whose structure and elastic properties can be precisely tuned by controlling the geometry of the elemental building blocks. Our results demonstrate the potential synergy between DNA origami technology and colloidal science, in which the former allows for rapid and robust synthesis of complex particles, and the latter can be used to assemble such particles into bulk materials

Polarized light microscopy in reproductive and developmental biology

Author Posting. © The Author(s), 2013. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Molecular Reproduction and Development (2013), doi:10.1002/mrd.22221.The polarized light microscope reveals orientational order in native molecular structures inside living cells, tissues, and whole organisms. Therefore, it is a powerful tool to monitor and analyze the early developmental stages of organisms that lend themselves to microscopic observations. In this article we briefly discuss the components specific to a traditional polarizing microscope and some historically important observations on chromosome packing in sperm head, first zygote division of the sea urchin, and differentiation initiated by the first uneven cell division in the sand dollar. We then introduce the LC-PolScope and describe its use for measuring birefringence and polarized fluorescence in living cells and tissues. Applications range from the enucleation of mouse oocytes to analyzing the polarized fluorescence of the water strider acrosome. We end by reporting first results on the birefringence of the developing chick brain, which we analyzed between developmental stages of days 12 through 20.This work was supported by funds from the National Institute of General Medical Sciences (grant 1R01GM100160-01A1 awarded to TT) and the National Institute of Biomedical Imaging and Bioengineering (grant EB002045 awarded to RO)

Polarization microscopy with the LC-PolScope

Author Posting. © The Author(s), 2003. This is the author's version of the work. It is posted here by permission of Cold Spring Harbor Laboratory Press for personal use, not for redistribution. The definitive version was published in Live Cell Imaging : A Laboratory Manual, edited by R. D. Goldman and D. L. Spector, :205-237. Cold Spring Harbor Laboratory Press, 2005. ISBN: 9780879696825.In the current chapter we describe the use of a new type of polarized light microscope which we started to develop at the Marine Biological Laboratory about ten years ago. The new “PolScope” is based on the traditional polarized light microscope and enhances it with the use of liquid- crystal devices and special image processing algorithms. The LC-PolScope measures polarization optical parameters in many specimen points simultaneously, in fast time intervals, and at the highest resolution of the light microscope. It rapidly generates a birefringence map whose pixel brightness is directly proportional to the local optical anisotropy, unaffected by the specimen orientation in the plane of view, as well as a map depicting the slow axis orientation of the birefringent regions. The basic LC-PolScope technology can be adapted to most research grade microscopes and is available commercially from Cambridge Research and Instrumentation (CRI, http://www.cri-inc.com) in Woburn, Massachusetts, under the trade name LC-PolScope.Financial support from the National Institute of General Medical Sciences and from the National Institute of Biomedical Imaging and Bioengineering through grants GM49210 and EB002045, respectively

Kinetochore-driven outgrowth of microtubules is a central contributor to kinetochore fiber maturation in crane-fly spermatocytes

© The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Molecular Biology of the Cell 25 (2014): 1437-1445, doi:10.1091/mbc.E14-01-0008.We use liquid crystal polarized light imaging to record the life histories of single kinetochore (K-) fibers in living crane-fly spermatocytes, from their origins as nascent K-fibers in early prometaphase to their fully matured form at metaphase, just before anaphase onset. Increased image brightness due to increased retardance reveals where microtubules are added during K-fiber formation. Analysis of experimentally generated bipolar spindles with only one centrosome, as well as of regular, bicentrosomal spindles, reveals that microtubule addition occurs at the kinetochore-proximal ends of K-fibers, and added polymer expands poleward, giving rise to the robust K-fibers of metaphase cells. These results are not compatible with a model for K-fiber formation in which microtubules are added to nascent fibers solely by repetitive “search and capture” of centrosomal microtubule plus ends. Our interpretation is that capture of centrosomal microtubules—when deployed—is limited to early stages in establishment of nascent K-fibers, which then mature through kinetochore-driven outgrowth. When kinetochore capture of centrosomal microtubules is not used, the polar ends of K-fibers grow outward from their kinetochores and usually converge to make a centrosome-free pole.This work was supported by Grant EB002045 from the National Institute of Biomedical Imaging and Bioengineering awarded to R.O