Selective machine learning of doubly robust functionals

While model selection is a well-studied topic in parametric and nonparametric regression or density estimation, selection of possibly high-dimensional nuisance parameters in semiparametric problems is far less developed. In this paper, we propose a selective machine learning framework for making inferences about a finite-dimensional functional defined on a semiparametric model, when the latter admits a doubly robust estimating function and several candidate machine learning algorithms are available for estimating the nuisance parameters. We introduce two new selection criteria for bias reduction in estimating the functional of interest, each based on a novel definition of pseudo-risk for the functional that embodies the double robustness property and thus is used to select the pair of learners that is nearest to fulfilling this property. We establish an oracle property for a multi-fold cross-validation version of the new selection criteria which states that our empirical criteria perform nearly as well as an oracle with a priori knowledge of the pseudo-risk for each pair of candidate learners. We also describe a smooth approximation to the selection criteria which allows for valid post-selection inference. Finally, we apply the approach to model selection of a semiparametric estimator of average treatment effect given an ensemble of candidate machine learners to account for confounding in an observational study

Nonlinear Structural Functional Models

A common objective in functional data analyses is the registration of data curves and estimation of the locations of their salient structures, such as spikes or local extrema. Existing methods separate curve modeling and structure estimation into disjoint steps, optimize different criteria for estimation, or recast the problem into the testing framework. Moreover, curve registration is often implemented in a pre-processing step. The aim of this dissertation is to ameliorate the shortcomings of existing methods through the development of unified nonlinear modeling procedures for the analysis of structural functional data. A general model-based framework is proposed to unify registration and estimation of curves and their structures. In particular, this work focuses on three specific research problems. First, a Sparse Semiparametric Nonlinear Model (SSNM) is proposed to jointly register curves, perform model selection, and estimate the features of sparsely-structured functional data. The SSNM is fitted to chromatographic data from a study of the composition of Chinese rhubarb. Next, the SSNM is extended to the nonlinear mixed effects setting to enable the comparison of sparse structures across group-averaged curves. The model is utilized to compare compositions of medicinal herbs collected from two groups of production sites. Finally, a Piecewise Monotonic B-spline Model (PMBM) is proposed to estimate the locations of local extrema in a curve. The PMBM is applied to MRI data from a study of gray matter growth in the brain

Functional Regression

Functional data analysis (FDA) involves the analysis of data whose ideal units of observation are functions defined on some continuous domain, and the observed data consist of a sample of functions taken from some population, sampled on a discrete grid. Ramsay and Silverman's 1997 textbook sparked the development of this field, which has accelerated in the past 10 years to become one of the fastest growing areas of statistics, fueled by the growing number of applications yielding this type of data. One unique characteristic of FDA is the need to combine information both across and within functions, which Ramsay and Silverman called replication and regularization, respectively. This article will focus on functional regression, the area of FDA that has received the most attention in applications and methodological development. First will be an introduction to basis functions, key building blocks for regularization in functional regression methods, followed by an overview of functional regression methods, split into three types: [1] functional predictor regression (scalar-on-function), [2] functional response regression (function-on-scalar) and [3] function-on-function regression. For each, the role of replication and regularization will be discussed and the methodological development described in a roughly chronological manner, at times deviating from the historical timeline to group together similar methods. The primary focus is on modeling and methodology, highlighting the modeling structures that have been developed and the various regularization approaches employed. At the end is a brief discussion describing potential areas of future development in this field

Covariance Estimation: The GLM and Regularization Perspectives

Finding an unconstrained and statistically interpretable reparameterization of a covariance matrix is still an open problem in statistics. Its solution is of central importance in covariance estimation, particularly in the recent high-dimensional data environment where enforcing the positive-definiteness constraint could be computationally expensive. We provide a survey of the progress made in modeling covariance matrices from two relatively complementary perspectives: (1) generalized linear models (GLM) or parsimony and use of covariates in low dimensions, and (2) regularization or sparsity for high-dimensional data. An emerging, unifying and powerful trend in both perspectives is that of reducing a covariance estimation problem to that of estimating a sequence of regression problems. We point out several instances of the regression-based formulation. A notable case is in sparse estimation of a precision matrix or a Gaussian graphical model leading to the fast graphical LASSO algorithm. Some advantages and limitations of the regression-based Cholesky decomposition relative to the classical spectral (eigenvalue) and variance-correlation decompositions are highlighted. The former provides an unconstrained and statistically interpretable reparameterization, and guarantees the positive-definiteness of the estimated covariance matrix. It reduces the unintuitive task of covariance estimation to that of modeling a sequence of regressions at the cost of imposing an a priori order among the variables. Elementwise regularization of the sample covariance matrix such as banding, tapering and thresholding has desirable asymptotic properties and the sparse estimated covariance matrix is positive definite with probability tending to one for large samples and dimensions.Comment: Published in at http://dx.doi.org/10.1214/11-STS358 the Statistical Science (http://www.imstat.org/sts/) by the Institute of Mathematical Statistics (http://www.imstat.org

Semiparametric Regression During 2003–2007

Semiparametric regression is a fusion between parametric regression and nonparametric regression and the title of a book that we published on the topic in early 2003. We review developments in the field during the five year period since the book was written. We find semiparametric regression to be a vibrant field with substantial involvement and activity, continual enhancement and widespread application