Multi-dataset Training for Medical Image Segmentation as a Service

Deep Learning tools are widely used for medical image segmentation. The results produced by these techniques depend to a great extent on the data sets used to train the used network. Nowadays many cloud service providers offer the required resources to train networks and deploy deep learning networks. This makes the idea of segmentation as a cloud-based service attractive. In this paper we study the possibility of training, a generalized configurable, Keras U-Net to test the feasibility of training with images acquired, with specific instruments, to perform predictions on data from other instruments. We use, as our application example, the segmentation of Optic Disc and Cup which can be applied to glaucoma detection. We use two publicly available data sets (RIM-One V3 and DRISHTI) to train either independently or combining their data.Ministerio de Economía y Competitividad TEC2016-77785-

Reconstruction-driven Dynamic Refinement based Unsupervised Domain Adaptation for Joint Optic Disc and Cup Segmentation

Glaucoma is one of the leading causes of irreversible blindness. Segmentation of optic disc (OD) and optic cup (OC) on fundus images is a crucial step in glaucoma screening. Although many deep learning models have been constructed for this task, it remains challenging to train an OD/OC segmentation model that could be deployed successfully to different healthcare centers. The difficulties mainly comes from the domain shift issue, i.e., the fundus images collected at these centers usually vary greatly in the tone, contrast, and brightness. To address this issue, in this paper, we propose a novel unsupervised domain adaptation (UDA) method called Reconstruction-driven Dynamic Refinement Network (RDR-Net), where we employ a due-path segmentation backbone for simultaneous edge detection and region prediction and design three modules to alleviate the domain gap. The reconstruction alignment (RA) module uses a variational auto-encoder (VAE) to reconstruct the input image and thus boosts the image representation ability of the network in a self-supervised way. It also uses a style-consistency constraint to force the network to retain more domain-invariant information. The low-level feature refinement (LFR) module employs input-specific dynamic convolutions to suppress the domain-variant information in the obtained low-level features. The prediction-map alignment (PMA) module elaborates the entropy-driven adversarial learning to encourage the network to generate source-like boundaries and regions. We evaluated our RDR-Net against state-of-the-art solutions on four public fundus image datasets. Our results indicate that RDR-Net is superior to competing models in both segmentation performance and generalization abilit

EDDense-Net: Fully Dense Encoder Decoder Network for Joint Segmentation of Optic Cup and Disc

Glaucoma is an eye disease that causes damage to the optic nerve, which can lead to visual loss and permanent blindness. Early glaucoma detection is therefore critical in order to avoid permanent blindness. The estimation of the cup-to-disc ratio (CDR) during an examination of the optical disc (OD) is used for the diagnosis of glaucoma. In this paper, we present the EDDense-Net segmentation network for the joint segmentation of OC and OD. The encoder and decoder in this network are made up of dense blocks with a grouped convolutional layer in each block, allowing the network to acquire and convey spatial information from the image while simultaneously reducing the network's complexity. To reduce spatial information loss, the optimal number of filters in all convolution layers were utilised. In semantic segmentation, dice pixel classification is employed in the decoder to alleviate the problem of class imbalance. The proposed network was evaluated on two publicly available datasets where it outperformed existing state-of-the-art methods in terms of accuracy and efficiency. For the diagnosis and analysis of glaucoma, this method can be used as a second opinion system to assist medical ophthalmologists

Retinal Optic Disc Segmentation using Conditional Generative Adversarial Network

This paper proposed a retinal image segmentation method based on conditional Generative Adversarial Network (cGAN) to segment optic disc. The proposed model consists of two successive networks: generator and discriminator. The generator learns to map information from the observing input (i.e., retinal fundus color image), to the output (i.e., binary mask). Then, the discriminator learns as a loss function to train this mapping by comparing the ground-truth and the predicted output with observing the input image as a condition.Experiments were performed on two publicly available dataset; DRISHTI GS1 and RIM-ONE. The proposed model outperformed state-of-the-art-methods by achieving around 0.96% and 0.98% of Jaccard and Dice coefficients, respectively. Moreover, an image segmentation is performed in less than a second on recent GPU.Comment: 8 pages, Submitted to 21st International Conference of the Catalan Association for Artificial Intelligence (CCIA 2018