110,667 research outputs found
Universe creation on a computer
The purpose of this paper is to provide an account of the epistemology and
metaphysics of universe creation on a computer
Partial-volume Bayesian classification of material mixtures in MR volume data using voxel histograms
The authors present a new algorithm for identifying the distribution of different material types in volumetric datasets such as those produced with magnetic resonance imaging (MRI) or computed tomography (CT). Because the authors allow for mixtures of materials and treat voxels as regions, their technique reduces errors that other classification techniques can create along boundaries between materials and is particularly useful for creating accurate geometric models and renderings from volume data. It also has the potential to make volume measurements more accurately and classifies noisy, low-resolution data well. There are two unusual aspects to the authors' approach. First, they assume that, due to partial-volume effects, or blurring, voxels can contain more than one material, e.g., both muscle and fat; the authors compute the relative proportion of each material in the voxels. Second, they incorporate information from neighboring voxels into the classification process by reconstructing a continuous function, ρ(x), from the samples and then looking at the distribution of values that ρ(x) takes on within the region of a voxel. This distribution of values is represented by a histogram taken over the region of the voxel; the mixture of materials that those values measure is identified within the voxel using a probabilistic Bayesian approach that matches the histogram by finding the mixture of materials within each voxel most likely to have created the histogram. The size of regions that the authors classify is chosen to match the sparing of the samples because the spacing is intrinsically related to the minimum feature size that the reconstructed continuous function can represent
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Revealing ensemble state transition patterns in multi-electrode neuronal recordings using hidden Markov models
In order to harness the computational capacity of dissociated cultured neuronal networks, it is necessary to understand neuronal dynamics and connectivity on a mesoscopic scale. To this end, this paper uncovers dynamic spatiotemporal patterns emerging from electrically stimulated neuronal cultures using hidden Markov models (HMMs) to characterize multi-channel spike trains as a progression of patterns of underlying states of neuronal activity. However, experimentation aimed at optimal choice of parameters for such models is essential and results are reported in detail. Results derived from ensemble neuronal data revealed highly repeatable patterns of state transitions in the order of milliseconds in response to probing stimuli
Topological Schemas of Memory Spaces
Hippocampal cognitive map---a neuronal representation of the spatial
environment---is broadly discussed in the computational neuroscience literature
for decades. More recent studies point out that hippocampus plays a major role
in producing yet another cognitive framework that incorporates not only
spatial, but also nonspatial memories---the memory space. However, unlike
cognitive maps, memory spaces have been barely studied from a theoretical
perspective. Here we propose an approach for modeling hippocampal memory spaces
as an epiphenomenon of neuronal spiking activity. First, we suggest that the
memory space may be viewed as a finite topological space---a hypothesis that
allows treating both spatial and nonspatial aspects of hippocampal function on
equal footing. We then model the topological properties of the memory space to
demonstrate that this concept naturally incorporates the notion of a cognitive
map. Lastly, we suggest a formal description of the memory consolidation
process and point out a connection between the proposed model of the memory
spaces to the so-called Morris' schemas, which emerge as the most compact
representation of the memory structure.Comment: 24 pages, 8 Figures, 1 Suppl. Figur
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