Coupling geometry on binary bipartite networks: hypotheses testing on pattern geometry and nestedness

Upon a matrix representation of a binary bipartite network, via the permutation invariance, a coupling geometry is computed to approximate the minimum energy macrostate of a network's system. Such a macrostate is supposed to constitute the intrinsic structures of the system, so that the coupling geometry should be taken as information contents, or even the nonparametric minimum sufficient statistics of the network data. Then pertinent null and alternative hypotheses, such as nestedness, are to be formulated according to the macrostate. That is, any efficient testing statistic needs to be a function of this coupling geometry. These conceptual architectures and mechanisms are by and large still missing in community ecology literature, and rendered misconceptions prevalent in this research area. Here the algorithmically computed coupling geometry is shown consisting of deterministic multiscale block patterns, which are framed by two marginal ultrametric trees on row and column axes, and stochastic uniform randomness within each block found on the finest scale. Functionally a series of increasingly larger ensembles of matrix mimicries is derived by conforming to the multiscale block configurations. Here matrix mimicking is meant to be subject to constraints of row and column sums sequences. Based on such a series of ensembles, a profile of distributions becomes a natural device for checking the validity of testing statistics or structural indexes. An energy based index is used for testing whether network data indeed contains structural geometry. A new version block-based nestedness index is also proposed. Its validity is checked and compared with the existing ones. A computing paradigm, called Data Mechanics, and its application on one real data network are illustrated throughout the developments and discussions in this paper

A Multiscale Diffuse-Interface Model for Two-Phase Flow in Porous Media

In this paper we consider a multiscale phase-field model for capillarity-driven flows in porous media. The presented model constitutes a reduction of the conventional Navier-Stokes-Cahn-Hilliard phase-field model, valid in situations where interest is restricted to dynamical and equilibrium behavior in an aggregated sense, rather than a precise description of microscale flow phenomena. The model is based on averaging of the equation of motion, thereby yielding a significant reduction in the complexity of the underlying Navier-Stokes-Cahn-Hilliard equations, while retaining its macroscopic dynamical and equilibrium properties. Numerical results are presented for the representative 2-dimensional capillary-rise problem pertaining to two closely spaced vertical plates with both identical and disparate wetting properties. Comparison with analytical solutions for these test cases corroborates the accuracy of the presented multiscale model. In addition, we present results for a capillary-rise problem with a non-trivial geometry corresponding to a porous medium

Towards physical cosmology: geometrical interpretation of Dark Energy, Dark Matter and Inflation without fundamental sources

We outline the key-steps towards the construction of a physical, fully relativistic cosmology, in which we aim to trace Dark Energy and Dark Matter back to physical properties of space. The influence of inhomogeneities on the effective evolution history of the Universe is encoded in backreaction terms and expressed through spatially averaged geometrical invariants. These are absent and interpreted as missing dark fundamental sources in the standard model. In the inhomogeneous case they can be interpreted as energies of an emerging scalar field (the morphon). These averaged invariants vanish for a homogeneous geometry, where the morphon is in an unstable equilibrium state. If this state is perturbed, the morphon can act as a classical inflaton in the Early Universe and its de-balanced energies can mimic the dark sources in the Late Universe, depending on spatial scale as Dark Energy or as Dark Matter, respectively. We lay down a line of arguments that is qualitatively conclusive, and we outline open problems of quantitative nature, related to the interpretation of observations.Comment: 14 pages, 6 figures; presented at the International Conference on Two Cosmological Models, Universidad Iberoamericana Ciudad de M\'exico - Department of Physics and Mathematics, November 19 (2010

Fracton pairing mechanism for "strange" superconductors: Self-assembling organic polymers and copper-oxide compounds

Self-assembling organic polymers and copper-oxide compounds are two classes of "strange" superconductors, whose challenging behavior does not comply with the traditional picture of Bardeen, Cooper, and Schrieffer (BCS) superconductivity in regular crystals. In this paper, we propose a theoretical model that accounts for the strange superconducting properties of either class of the materials. These properties are considered as interconnected manifestations of the same phenomenon: We argue that superconductivity occurs in the both cases because the charge carriers (i.e., electrons or holes) exchange {\it fracton excitations}, quantum oscillations of fractal lattices that mimic the complex microscopic organization of the strange superconductors. For the copper oxides, the superconducting transition temperature $T_c$ as predicted by the fracton mechanism is of the order of $\sim 150$ K. We suggest that the marginal ingredient of the high-temperature superconducting phase is provided by fracton coupled holes that condensate in the conducting copper-oxygen planes owing to the intrinsic field-effect-transistor configuration of the cuprate compounds. For the gate-induced superconducting phase in the electron-doped polymers, we simultaneously find a rather modest transition temperature of $\sim (2-3)$ K owing to the limitations imposed by the electron tunneling processes on a fractal geometry. We speculate that hole-type superconductivity observes larger onset temperatures when compared to its electron-type counterpart. This promises an intriguing possibility of the high-temperature superconducting states in hole-doped complex materials. A specific prediction of the present study is universality of ac conduction for $T\gtrsim T_c$.Comment: 12 pages (including separate abstract page), no figure