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Prediction of progression in idiopathic pulmonary fibrosis using CT scans atbaseline: A quantum particle swarm optimization - Random forest approach
Idiopathic pulmonary fibrosis (IPF) is a fatal lung disease characterized by an unpredictable progressive declinein lung function. Natural history of IPF is unknown and the prediction of disease progression at the time ofdiagnosis is notoriously difficult. High resolution computed tomography (HRCT) has been used for the diagnosisof IPF, but not generally for monitoring purpose. The objective of this work is to develop a novel predictivemodel for the radiological progression pattern at voxel-wise level using only baseline HRCT scans. Mainly, thereare two challenges: (a) obtaining a data set of features for region of interest (ROI) on baseline HRCT scans andtheir follow-up status; and (b) simultaneously selecting important features from high-dimensional space, andoptimizing the prediction performance. We resolved the first challenge by implementing a study design andhaving an expert radiologist contour ROIs at baseline scans, depending on its progression status in follow-upvisits. For the second challenge, we integrated the feature selection with prediction by developing an algorithmusing a wrapper method that combines quantum particle swarm optimization to select a small number of featureswith random forest to classify early patterns of progression. We applied our proposed algorithm to analyzeanonymized HRCT images from 50 IPF subjects from a multi-center clinical trial. We showed that it yields aparsimonious model with 81.8% sensitivity, 82.2% specificity and an overall accuracy rate of 82.1% at the ROIlevel. These results are superior to other popular feature selections and classification methods, in that ourmethod produces higher accuracy in prediction of progression and more balanced sensitivity and specificity witha smaller number of selected features. Our work is the first approach to show that it is possible to use onlybaseline HRCT scans to predict progressive ROIs at 6 months to 1year follow-ups using artificial intelligence
Optimizing Photonic Nanostructures via Multi-fidelity Gaussian Processes
We apply numerical methods in combination with finite-difference-time-domain
(FDTD) simulations to optimize transmission properties of plasmonic mirror
color filters using a multi-objective figure of merit over a five-dimensional
parameter space by utilizing novel multi-fidelity Gaussian processes approach.
We compare these results with conventional derivative-free global search
algorithms, such as (single-fidelity) Gaussian Processes optimization scheme,
and Particle Swarm Optimization---a commonly used method in nanophotonics
community, which is implemented in Lumerical commercial photonics software. We
demonstrate the performance of various numerical optimization approaches on
several pre-collected real-world datasets and show that by properly trading off
expensive information sources with cheap simulations, one can more effectively
optimize the transmission properties with a fixed budget.Comment: NIPS 2018 Workshop on Machine Learning for Molecules and Materials.
arXiv admin note: substantial text overlap with arXiv:1811.0075
Genetic learning particle swarm optimization
Social learning in particle swarm optimization (PSO) helps collective efficiency, whereas individual reproduction in genetic algorithm (GA) facilitates global effectiveness. This observation recently leads to hybridizing PSO with GA for performance enhancement. However, existing work uses a mechanistic parallel superposition and research has shown that construction of superior exemplars in PSO is more effective. Hence, this paper first develops a new framework so as to organically hybridize PSO with another optimization technique for ālearning.ā This leads to a generalized ālearning PSOā paradigm, the *L-PSO. The paradigm is composed of two cascading layers, the first for exemplar generation and the second for particle updates as per a normal PSO algorithm. Using genetic evolution to breed promising exemplars for PSO, a specific novel *L-PSO algorithm is proposed in the paper, termed genetic learning PSO (GL-PSO). In particular, genetic operators are used to generate exemplars from which particles learn and, in turn, historical search information of particles provides guidance to the evolution of the exemplars. By performing crossover, mutation, and selection on the historical information of particles, the constructed exemplars are not only well diversified, but also high qualified. Under such guidance, the global search ability and search efficiency of PSO are both enhanced. The proposed GL-PSO is tested on 42 benchmark functions widely adopted in the literature. Experimental results verify the effectiveness, efficiency, robustness, and scalability of the GL-PSO
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Handling boundary constraints for particle swarm optimization in high-dimensional search space
Despite the fact that the popular particle swarm optimizer (PSO) is currently being extensively applied to many real-world problems that often have high-dimensional and complex fitness landscapes, the effects of boundary constraints on PSO have not attracted adequate attention in the literature. However, in accordance with the theoretical analysis in [11], our numerical experiments show that particles tend to fly outside of the boundary in the first few iterations at a very high probability in high-dimensional search spaces. Consequently, the method used to handle boundary violations is critical to the performance of PSO. In this study, we reveal that the widely used random and absorbing bound-handling schemes may paralyze PSO for high-dimensional and complex problems. We also explore in detail the distinct mechanisms responsible for the failures of these two bound-handling schemes. Finally, we suggest that using high-dimensional and complex benchmark functions, such as the composition functions in [19], is a prerequisite to identifying the potential problems in applying PSO to many real-world applications because certain properties of standard benchmark functions make problems inexplicit. Ā© 2011 Elsevier Inc. All rights reserved
A memetic particle swarm optimisation algorithm for dynamic multi-modal optimisation problems
Copyright @ 2011 Taylor & Francis.Many real-world optimisation problems are both dynamic and multi-modal, which require an optimisation algorithm not only to find as many optima under a specific environment as possible, but also to track their moving trajectory over dynamic environments. To address this requirement, this article investigates a memetic computing approach based on particle swarm optimisation for dynamic multi-modal optimisation problems (DMMOPs). Within the framework of the proposed algorithm, a new speciation method is employed to locate and track multiple peaks and an adaptive local search method is also hybridised to accelerate the exploitation of species generated by the speciation method. In addition, a memory-based re-initialisation scheme is introduced into the proposed algorithm in order to further enhance its performance in dynamic multi-modal environments. Based on the moving peaks benchmark problems, experiments are carried out to investigate the performance of the proposed algorithm in comparison with several state-of-the-art algorithms taken from the literature. The experimental results show the efficiency of the proposed algorithm for DMMOPs.This work was supported by the Key Program of National Natural Science Foundation (NNSF) of China under Grant no. 70931001, the Funds for Creative Research Groups of China under Grant no. 71021061, the National Natural Science Foundation (NNSF) of China under Grant 71001018, Grant no. 61004121 and Grant no. 70801012 and the Fundamental Research Funds for the Central Universities Grant no. N090404020, the Engineering and Physical Sciences Research Council (EPSRC) of UK under Grant no. EP/E060722/01 and Grant EP/E060722/02, and the Hong Kong Polytechnic University under Grant G-YH60
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