Rapid Sequence Identification of Potential Pathogens Using Techniques from Sparse Linear Algebra

The decreasing costs and increasing speed and accuracy of DNA sample collection, preparation, and sequencing has rapidly produced an enormous volume of genetic data. However, fast and accurate analysis of the samples remains a bottleneck. Here we present D$^{4}$RAGenS, a genetic sequence identification algorithm that exhibits the Big Data handling and computational power of the Dynamic Distributed Dimensional Data Model (D4M). The method leverages linear algebra and statistical properties to increase computational performance while retaining accuracy by subsampling the data. Two run modes, Fast and Wise, yield speed and precision tradeoffs, with applications in biodefense and medical diagnostics. The D$^{4}$RAGenS analysis algorithm is tested over several datasets, including three utilized for the Defense Threat Reduction Agency (DTRA) metagenomic algorithm contest

Improved Lossy Image Compression with Priming and Spatially Adaptive Bit Rates for Recurrent Networks

We propose a method for lossy image compression based on recurrent, convolutional neural networks that outperforms BPG (4:2:0 ), WebP, JPEG2000, and JPEG as measured by MS-SSIM. We introduce three improvements over previous research that lead to this state-of-the-art result. First, we show that training with a pixel-wise loss weighted by SSIM increases reconstruction quality according to several metrics. Second, we modify the recurrent architecture to improve spatial diffusion, which allows the network to more effectively capture and propagate image information through the network's hidden state. Finally, in addition to lossless entropy coding, we use a spatially adaptive bit allocation algorithm to more efficiently use the limited number of bits to encode visually complex image regions. We evaluate our method on the Kodak and Tecnick image sets and compare against standard codecs as well recently published methods based on deep neural networks

High efficiency compression for object detection

Image and video compression has traditionally been tailored to human vision. However, modern applications such as visual analytics and surveillance rely on computers seeing and analyzing the images before (or instead of) humans. For these applications, it is important to adjust compression to computer vision. In this paper we present a bit allocation and rate control strategy that is tailored to object detection. Using the initial convolutional layers of a state-of-the-art object detector, we create an importance map that can guide bit allocation to areas that are important for object detection. The proposed method enables bit rate savings of 7% or more compared to default HEVC, at the equivalent object detection rate.Comment: The paper is published in IEEE ICASSP 18

A study and experiment plan for digital mobile communication via satellite

The viability of mobile communications is examined within the context of a frequency division multiple access, single channel per carrier satellite system emphasizing digital techniques to serve a large population of users. The intent is to provide the mobile users with a grade of service consistant with the requirements for remote, rural (perhaps emergency) voice communications, but which approaches toll quality speech. A traffic model is derived on which to base the determination of the required maximum number of satellite channels to provide the anticipated level of service. Various voice digitalization and digital modulation schemes are reviewed along with a general link analysis of the mobile system. Demand assignment multiple access considerations and analysis tradeoffs are presented. Finally, a completed configuration is described