Information Theoretical Analysis of Synaptic Communication for Nanonetworks

© 2018 IEEE. Communication among neurons is the highly evolved and efficient nanoscale communication paradigm, hence the most promising technique for biocompatible nanonetworks. This necessitates the understanding of neuro-spike communication from information theoretical perspective to reach a reference model for nanonetworks. This would also contribute towards developing ICT-based diagnostics techniques for neuro-degenerative diseases. Thus, in this paper, we focus on the fundamental building block of neuro-spike communication, i.e., signal transmission over a synapse, to evaluate its information transfer rate. We aim to analyze a realistic synaptic communication model, which for the first time, encompasses the variation in vesicle release probability with time, synaptic geometry and the re-uptake of neurotransmitters by pre-synaptic terminal. To achieve this objective, we formulate the mutual information between input and output of the synapse. Then, since this communication paradigm has memory, we evaluate the average mutual information over multiple transmissions to find its overall capacity. We derive a closed-form expression for the capacity of the synaptic communication as well as calculate the capacity-achieving input probability distribution. Finally, we find the effects of variation in different synaptic parameters on the information capacity and prove that the diffusion process does not decrease the information a neural response carries about the stimulus in real scenario

Fundamentals of molecular information and communication science

© 1963-2012 IEEE. Molecular communication (MC) is the most promising communication paradigm for nanonetwork realization since it is a natural phenomenon observed among living entities with nanoscale components. Since MC significantly differs from classical communication systems, it mandates reinvestigation of information and communication theoretical fundamentals. The closest examples of MC architectures are present inside our own body. Therefore, in this paper, we investigate the existing literature on intrabody nanonetworks and different MC paradigms to establish and introduce the fundamentals of molecular information and communication science. We highlight future research directions and open issues that need to be addressed for revealing the fundamental limits of this science. Although the scope of this development encompasses wide range of applications, we particularly emphasize its significance for life sciences by introducing potential diagnosis and treatment techniques for diseases caused by dysfunction of intrabody nanonetworks

Sum rate analysis of multiple-access neuro-spike communication channel with dynamic spiking threshold

© 2019 Elsevier B.V. The information from outside world is encoded into spikes by the sensory neurons. These spikes are further propagated to different brain regions through various neural pathways. In the cortical region, each neuron receives inputs from multiple neurons that change its membrane potential. If the accumulated change in the membrane potential is more than a threshold value, a spike is generated. According to various studies in neuroscience, this spiking threshold adapts with time depending on the previous spike. This causes short-term changes in the neural responses giving rise to short-term plasticity. Therefore, in this paper, we analyze a multiple-input single-output (MISO) neuro-spike communication channel and study the effects of dynamic spiking threshold on mutual information and maximum achievable sum rate of the channel. Since spike generation consumes a generous portion of the metabolic energy provided to the brain, we further put metabolic constraint in calculating the mutual information and find a trade-off between maximum achievable sum rate and metabolic energy consumed. Moreover, we analyze three types of neurons present in the cortical region, i.e., Regular spiking, Intrinsic bursting and Fast spiking neurons. We aim to characterize these neurons in terms of encoding/transmission rates and energy expenditure. It will provide a guideline for the practical implementation of bio-inspired nanonetworks as well as for the development of ICT-based diagnosis and treatment techniques for neural diseases.This work was supported in part by European Research Council (ERC) under grant ERC-2013-CoG 616922 (Project MINERVA) and ERC-2017-PoC 780645 (ERC Proof of Concept project MINRGRACE)

Rate region analysis of multi-terminal neuronal nanoscale molecular communication channel

© 2017 IEEE. In this paper, we investigate the communication channel capacity among hippocampal pyramidal neurons. To this aim, we study the processes included in this communication and model them with realistic communication system components based on the existing reports in the physiology literature. We consider the communication between two neurons and reveal the effects of the existence of multiple terminals between these neurons on the achievable rate per spike. To this objective, we derive the power spectral density (PSD) of the signal in the output neuron and utilize it to calculate the rate region of the channel. Moreover, we evaluate the impacts of vesicle availability on the achievable rate by deriving the expected number of available vesicles in input neuron using a realistic vesicle release model. Simulation results show that number of available vesicles for release does not affect the achievable rate of neuro-spike communication with univesicular release model. However, in neurons that multiple vesicles can release from each synaptic terminal, achievable rate is significantly affected by depletion of vesicles. Moreover, we show that increasing the number of synaptic terminals between two neurons makes the synaptic connection stronger. Hence, it is an important factor in learning and memory, which occur in the hippocampal region of the brain based on the synaptic connectivity

What Really is `Molecule' in Molecular Communications? The Quest for Physics of Particle-based Information Carriers

Molecular communication, as implied by its name, uses molecules as information carriers for communication between objects. It has an advantage over traditional electromagnetic-wave-based communication in that molecule-based systems could be biocompatible, operable in challenging environments, and energetically undemanding. Consequently, they are envisioned to have a broad range of applications, such as in the Internet of Bio-nano Things, targeted drug delivery, and agricultural monitoring. Despite the rapid development of the field, with an increasing number of theoretical models and experimental testbeds established by researchers, a fundamental aspect of the field has often been sidelined, namely, the nature of the molecule in molecular communication. The potential information molecules could exhibit a wide range of properties, making them require drastically different treatments when being modeled and experimented upon. Therefore, in this paper, we delve into the intricacies of commonly used information molecules, examining their fundamental physical characteristics, associated communication systems, and potential applications in a more realistic manner, focusing on the influence of their own properties. Through this comprehensive survey, we aim to offer a novel yet essential perspective on molecular communication, thereby bridging the current gap between theoretical research and real-world applications

An information theoretical analysis of multi-terminal neuro-spike communication network in spinal cord

© 2018 Association for Computing Machinery. Communication theoretical understanding of healthy and diseased connections in the spinal cord motor system is crucial for realizing future information and communication technology (ICT) based diagnosis and treatment techniques for spinal cord injuries (SCI). A spinal cord motor nucleus associated with a particular muscle constitutes an ideal candidate for studying to have an understanding of SCI. Typical spinal cord motor nucleus system contains pool of lower motor neurons (MNs) controlling a muscle by integrating synaptic inputs from spinal interneurons (INs), upper motor neurons (DNs) and sensory neurons (SNs). In this study, we consider this system from ICT perspective. Our aim is to quantify the rate of information flow across a spinal cord motor nucleus. To this end, we model an equivalent single-hop multiterminal network, where multiple transmitting nodes representing heterogeneous population of DNs, INs and SNs send information to multiple receiving nodes corresponding to MNs. To identify the outputs at receiving nodes, we define corresponding neurospike communication channel and then find the bound on total rates across this network. Based on the network model, we analyze achievable rates for a particular motor nucleus system called Tibialis Anterior (TA) motor nucleus in the spinal cord numerically and simulate several spinal cord dysfunction scenarios. The numerical results reveal that decrease in the maximum total rates with the lower motor neuron injury causes weakness in the affected muscle

Feed-forward and Feedback Control in Astrocytes for Ca2+-based Molecular Communications Nanonetworks

Synaptic plasticity depends on the gliotransmitters’ concentration in the synaptic channel. And, an abnormal concentration of gliotransmitters is linked to neurodegenerative diseases, including Alzheimer’s, Parkinson’s, and epilepsy. In this paper, a theoretical investigation of the cause of the abnormal concentration of gliotransmitters and how to achieve its control is presented through a Ca2+-signalling-based molecular communications framework. A feed-forward and feedback control technique is used to manipulate IP3 values to stabilise the concentration of Ca2+ inside the astrocytes. The theoretical analysis of the given model aims i) to stabilize the Ca2+ concentration around a particular desired level in order to prevent abnormal gliotransmitters’ concentration (extremely high or low concentration can result in neurodegeneration), ii) to improve the molecular communication performance that utilises Ca2+ signalling, and maintain gliotransmitters’ regulation remotely. It shows that the refractory periods from Ca2+ can be maintained to lower the noise propagation resulting in smaller time-slots for bit transmission, which can also improve the delay and gain performances. The proposed approach can potentially lead to novel nanomedicine solutions for the treatment of neurodegenerative diseases, where a combination of nanotechnology and gene therapy approaches can be used to elicit the regulated Ca2+ signalling in astrocytes, ultimately improving neuronal activity