A Field Guide to Genetic Programming

xiv, 233 p. : il. ; 23 cm.Libro ElectrónicoA Field Guide to Genetic Programming (ISBN 978-1-4092-0073-4) is an introduction to genetic programming (GP). GP is a systematic, domain-independent method for getting computers to solve problems automatically starting from a high-level statement of what needs to be done. Using ideas from natural evolution, GP starts from an ooze of random computer programs, and progressively refines them through processes of mutation and sexual recombination, until solutions emerge. All this without the user having to know or specify the form or structure of solutions in advance. GP has generated a plethora of human-competitive results and applications, including novel scientific discoveries and patentable inventions. The authorsIntroduction -- Representation, initialisation and operators in Tree-based GP -- Getting ready to run genetic programming -- Example genetic programming run -- Alternative initialisations and operators in Tree-based GP -- Modular, grammatical and developmental Tree-based GP -- Linear and graph genetic programming -- Probalistic genetic programming -- Multi-objective genetic programming -- Fast and distributed genetic programming -- GP theory and its applications -- Applications -- Troubleshooting GP -- Conclusions.Contents xi 1 Introduction 1.1 Genetic Programming in a Nutshell 1.2 Getting Started 1.3 Prerequisites 1.4 Overview of this Field Guide I Basics 2 Representation, Initialisation and GP 2.1 Representation 2.2 Initialising the Population 2.3 Selection 2.4 Recombination and Mutation Operators in Tree-based 3 Getting Ready to Run Genetic Programming 19 3.1 Step 1: Terminal Set 19 3.2 Step 2: Function Set 20 3.2.1 Closure 21 3.2.2 Sufficiency 23 3.2.3 Evolving Structures other than Programs 23 3.3 Step 3: Fitness Function 24 3.4 Step 4: GP Parameters 26 3.5 Step 5: Termination and solution designation 27 4 Example Genetic Programming Run 4.1 Preparatory Steps 29 4.2 Step-by-Step Sample Run 31 4.2.1 Initialisation 31 4.2.2 Fitness Evaluation Selection, Crossover and Mutation Termination and Solution Designation Advanced Genetic Programming 5 Alternative Initialisations and Operators in 5.1 Constructing the Initial Population 5.1.1 Uniform Initialisation 5.1.2 Initialisation may Affect Bloat 5.1.3 Seeding 5.2 GP Mutation 5.2.1 Is Mutation Necessary? 5.2.2 Mutation Cookbook 5.3 GP Crossover 5.4 Other Techniques 32 5.5 Tree-based GP 39 6 Modular, Grammatical and Developmental Tree-based GP 47 6.1 Evolving Modular and Hierarchical Structures 47 6.1.1 Automatically Defined Functions 48 6.1.2 Program Architecture and Architecture-Altering 50 6.2 Constraining Structures 51 6.2.1 Enforcing Particular Structures 52 6.2.2 Strongly Typed GP 52 6.2.3 Grammar-based Constraints 53 6.2.4 Constraints and Bias 55 6.3 Developmental Genetic Programming 57 6.4 Strongly Typed Autoconstructive GP with PushGP 59 7 Linear and Graph Genetic Programming 61 7.1 Linear Genetic Programming 61 7.1.1 Motivations 61 7.1.2 Linear GP Representations 62 7.1.3 Linear GP Operators 64 7.2 Graph-Based Genetic Programming 65 7.2.1 Parallel Distributed GP (PDGP) 65 7.2.2 PADO 67 7.2.3 Cartesian GP 67 7.2.4 Evolving Parallel Programs using Indirect Encodings 68 8 Probabilistic Genetic Programming 8.1 Estimation of Distribution Algorithms 69 8.2 Pure EDA GP 71 8.3 Mixing Grammars and Probabilities 74 9 Multi-objective Genetic Programming 75 9.1 Combining Multiple Objectives into a Scalar Fitness Function 75 9.2 Keeping the Objectives Separate 76 9.2.1 Multi-objective Bloat and Complexity Control 77 9.2.2 Other Objectives 78 9.2.3 Non-Pareto Criteria 80 9.3 Multiple Objectives via Dynamic and Staged Fitness Functions 80 9.4 Multi-objective Optimisation via Operator Bias 81 10 Fast and Distributed Genetic Programming 83 10.1 Reducing Fitness Evaluations/Increasing their Effectiveness 83 10.2 Reducing Cost of Fitness with Caches 86 10.3 Parallel and Distributed GP are Not Equivalent 88 10.4 Running GP on Parallel Hardware 89 10.4.1 Master–slave GP 89 10.4.2 GP Running on GPUs 90 10.4.3 GP on FPGAs 92 10.4.4 Sub-machine-code GP 93 10.5 Geographically Distributed GP 93 11 GP Theory and its Applications 97 11.1 Mathematical Models 98 11.2 Search Spaces 99 11.3 Bloat 101 11.3.1 Bloat in Theory 101 11.3.2 Bloat Control in Practice 104 III Practical Genetic Programming 12 Applications 12.1 Where GP has Done Well 12.2 Curve Fitting, Data Modelling and Symbolic Regression 12.3 Human Competitive Results – the Humies 12.4 Image and Signal Processing 12.5 Financial Trading, Time Series, and Economic Modelling 12.6 Industrial Process Control 12.7 Medicine, Biology and Bioinformatics 12.8 GP to Create Searchers and Solvers – Hyper-heuristics xiii 12.9 Entertainment and Computer Games 127 12.10The Arts 127 12.11Compression 128 13 Troubleshooting GP 13.1 Is there a Bug in the Code? 13.2 Can you Trust your Results? 13.3 There are No Silver Bullets 13.4 Small Changes can have Big Effects 13.5 Big Changes can have No Effect 13.6 Study your Populations 13.7 Encourage Diversity 13.8 Embrace Approximation 13.9 Control Bloat 13.10 Checkpoint Results 13.11 Report Well 13.12 Convince your Customers 14 Conclusions Tricks of the Trade A Resources A.1 Key Books A.2 Key Journals A.3 Key International Meetings A.4 GP Implementations A.5 On-Line Resources 145 B TinyGP 151 B.1 Overview of TinyGP 151 B.2 Input Data Files for TinyGP 153 B.3 Source Code 154 B.4 Compiling and Running TinyGP 162 Bibliography 167 Inde

Faculty Publications and Creative Works 2002

Introduction One of the ways in which we recognize our faculty at the University of New Mexico is through Faculty Publications & Creative Works. An annual publication, it highlights our faculty\u27s scholarly and creative activities and achievements and serves as a compendium of UNM faculty efforts during the 2001 calendar year. Faculty Publications & Creative Works strives to illustrate the depth and breadth of research activities performed throughout our University\u27s laboratories, studios and classrooms. We believe that the communication of individual research is a significant method of sharing concepts and thoughts and ultimately inspiring the birth of new ideas. In support of this, UNM faculty during 2002 produced over 2,278 works, including 1,735 scholarly papers and articles, 64 books, 195 book chapters, 174 reviews, 84 creative works and 26 patented works. We are proud of the accomplishments of our faculty which are in part reflected in this book, which illustrates the diversity of intellectual pursuits in support of research and education at the University of New Mexico. Terry Yates Vice Provost for Researc

Faculty Publications and Creative Works 2003

Faculty Publications & Creative Works is an annual compendium of scholarly and creative activities of University of New Mexico faculty during the noted calendar year. It serves to illustrate the robust and active intellectual pursuits conducted by the faculty in support of teaching and research at UNM

Artificial immune system for the Internet

We investigate the usability of the Artificial Immune Systems (AIS) approach for solving selected problems in computer networks. Artificial immune systems are created by using the concepts and algorithms inspired by the theory of how the Human Immune System (HIS) works. We consider two applications: detection of routing misbehavior in mobile ad hoc networks, and email spam filtering. In mobile ad hoc networks the multi-hop connectivity is provided by the collaboration of independent nodes. The nodes follow a common protocol in order to build their routing tables and forward the packets of other nodes. As there is no central control, some nodes may defect to follow the common protocol, which would have a negative impact on the overall connectivity in the network. We build an AIS for the detection of routing misbehavior by directly mapping the standard concepts and algorithms used for explaining how the HIS works. The implementation and evaluation in a simulator shows that the AIS mimics well most of the effects observed in the HIS, e.g. the faster secondary reaction to the already encountered misbehavior. However, its effectiveness and practical usability are very constrained, because some particularities of the problem cannot be accounted for by the approach, and because of the computational constrains (reported also in AIS literature) of the used negative selection algorithm. For the spam filtering problem, we apply the AIS concepts and algorithms much more selectively and in a less standard way, and we obtain much better results. We build the AIS for antispam on top of a standard technique for digest-based collaborative email spam filtering. We notice un advantageous and underemphasized technological difference between AISs and the HIS, and we exploit this difference to incorporate the negative selection in an innovative and computationally efficient way. We also improve the representation of the email digests used by the standard collaborative spam filtering scheme. We show that this new representation and the negative selection, when used together, improve significantly the filtering performance of the standard scheme on top of which we build our AIS. Our complete AIS for antispam integrates various innate and adaptive AIS mechanisms, including the mentioned specific use of the negative selection and the use of innate signalling mechanisms (PAMP and danger signals). In this way the AIS takes into account users' profiles, implicit or explicit feedback from the users, and the bulkiness of spam. We show by simulations that the overall AIS is very good both in detecting spam and in avoiding misdetection of good emails. Interestingly, both the innate and adaptive mechanisms prove to be crucial for achieving the good overall performance. We develop and test (within a simulator) our AIS for collaborative spam filtering in the case of email communications. The solution however seems to be well applicable to other types of Internet communications: Internet telephony, chat/sms, forum, news, blog, or web. In all these cases, the aim is to allow the wanted communications (content) and prevent those unwanted from reaching the end users and occupying their time and communication resources. The filtering problems, faced or likely to be faced in the near future by these applications, have or are likely to have the settings similar to those that we have in the email case: need for openness to unknown senders (creators of content, initiators of the communication), bulkiness in receiving spam (many recipients are usually affected by the same spam content), tolerance of the system to a small damage (to small amounts of unfiltered spam), possibility to implicitly or explicitly and in a cheap way obtain a feedback from the recipients about the damage (about spam that they receive), need for strong tolerance to wanted (non-spam) content. Our experiments with the email spam filtering show that our AIS, i.e. the way how we build it, is well fitted to such problem settings

Information Immune Systems

Many people are exposed to more information than they can process eectively. We describe an approach to building an information immune system that eliminates undesirable information before it reaches the user. This approac