672 research outputs found
Learning sparse representations of depth
This paper introduces a new method for learning and inferring sparse
representations of depth (disparity) maps. The proposed algorithm relaxes the
usual assumption of the stationary noise model in sparse coding. This enables
learning from data corrupted with spatially varying noise or uncertainty,
typically obtained by laser range scanners or structured light depth cameras.
Sparse representations are learned from the Middlebury database disparity maps
and then exploited in a two-layer graphical model for inferring depth from
stereo, by including a sparsity prior on the learned features. Since they
capture higher-order dependencies in the depth structure, these priors can
complement smoothness priors commonly used in depth inference based on Markov
Random Field (MRF) models. Inference on the proposed graph is achieved using an
alternating iterative optimization technique, where the first layer is solved
using an existing MRF-based stereo matching algorithm, then held fixed as the
second layer is solved using the proposed non-stationary sparse coding
algorithm. This leads to a general method for improving solutions of state of
the art MRF-based depth estimation algorithms. Our experimental results first
show that depth inference using learned representations leads to state of the
art denoising of depth maps obtained from laser range scanners and a time of
flight camera. Furthermore, we show that adding sparse priors improves the
results of two depth estimation methods: the classical graph cut algorithm by
Boykov et al. and the more recent algorithm of Woodford et al.Comment: 12 page
Bethe Projections for Non-Local Inference
Many inference problems in structured prediction are naturally solved by
augmenting a tractable dependency structure with complex, non-local auxiliary
objectives. This includes the mean field family of variational inference
algorithms, soft- or hard-constrained inference using Lagrangian relaxation or
linear programming, collective graphical models, and forms of semi-supervised
learning such as posterior regularization. We present a method to
discriminatively learn broad families of inference objectives, capturing
powerful non-local statistics of the latent variables, while maintaining
tractable and provably fast inference using non-Euclidean projected gradient
descent with a distance-generating function given by the Bethe entropy. We
demonstrate the performance and flexibility of our method by (1) extracting
structured citations from research papers by learning soft global constraints,
(2) achieving state-of-the-art results on a widely-used handwriting recognition
task using a novel learned non-convex inference procedure, and (3) providing a
fast and highly scalable algorithm for the challenging problem of inference in
a collective graphical model applied to bird migration.Comment: minor bug fix to appendix. appeared in UAI 201
GPstruct: Bayesian structured prediction using Gaussian processes
We introduce a conceptually novel structured prediction model, GPstruct, which is kernelized, non-parametric and Bayesian, by design. We motivate the model with respect to existing approaches, among others, conditional random fields (CRFs), maximum margin Markov networks (M ^3 N), and structured support vector machines (SVMstruct), which embody only a subset of its properties. We present an inference procedure based on Markov Chain Monte Carlo. The framework can be instantiated for a wide range of structured objects such as linear chains, trees, grids, and other general graphs. As a proof of concept, the model is benchmarked on several natural language processing tasks and a video gesture segmentation task involving a linear chain structure. We show prediction accuracies for GPstruct which are comparable to or exceeding those of CRFs and SVMstruct
Model reduction for stochastic CaMKII reaction kinetics in synapses by graph-constrained correlation dynamics.
A stochastic reaction network model of Ca(2+) dynamics in synapses (Pepke et al PLoS Comput. Biol. 6 e1000675) is expressed and simulated using rule-based reaction modeling notation in dynamical grammars and in MCell. The model tracks the response of calmodulin and CaMKII to calcium influx in synapses. Data from numerically intensive simulations is used to train a reduced model that, out of sample, correctly predicts the evolution of interaction parameters characterizing the instantaneous probability distribution over molecular states in the much larger fine-scale models. The novel model reduction method, 'graph-constrained correlation dynamics', requires a graph of plausible state variables and interactions as input. It parametrically optimizes a set of constant coefficients appearing in differential equations governing the time-varying interaction parameters that determine all correlations between variables in the reduced model at any time slice
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