PROGRAPE-1: A Programmable, Multi-Purpose Computer for Many-Body Simulations

We have developed PROGRAPE-1 (PROgrammable GRAPE-1), a programmable multi-purpose computer for many-body simulations. The main difference between PROGRAPE-1 and "traditional" GRAPE systems is that the former uses FPGA (Field Programmable Gate Array) chips as the processing elements, while the latter rely on the hardwired pipeline processor specialized to gravitational interactions. Since the logic implemented in FPGA chips can be reconfigured, we can use PROGRAPE-1 to calculate not only gravitational interactions but also other forms of interactions such as van der Waals force, hydrodynamical interactions in SPH calculation and so on. PROGRAPE-1 comprises two Altera EPF10K100 FPGA chips, each of which contains nominally 100,000 gates. To evaluate the programmability and performance of PROGRAPE-1, we implemented a pipeline for gravitational interaction similar to that of GRAPE-3. One pipeline fitted into a single FPGA chip, which operated at 16 MHz clock. Thus, for gravitational interaction, PROGRAPE-1 provided the speed of 0.96 Gflops-equivalent. PROGRAPE will prove to be useful for wide-range of particle-based simulations in which the calculation cost of interactions other than gravity is high, such as the evaluation of SPH interactions.Comment: 20 pages with 9 figures; submitted to PAS

H-SIMD machine : configurable parallel computing for data-intensive applications

This dissertation presents a hierarchical single-instruction multiple-data (H-SLMD) configurable computing architecture to facilitate the efficient execution of data-intensive applications on field-programmable gate arrays (FPGAs). H-SIMD targets data-intensive applications for FPGA-based system designs. The H-SIMD machine is associated with a hierarchical instruction set architecture (HISA) which is developed for each application. The main objectives of this work are to facilitate ease of program development and high performance through ease of scheduling operations and overlapping communications with computations. The H-SIMD machine is composed of the host, FPGA and nano-processor layers. They execute host SIMD instructions (HSIs), FPGA SIMD instructions (FSIs) and nano-processor instructions (NPLs), respectively. A distinction between communication and computation instructions is intended for all the HISA layers. The H-SIMD machine also employs a memory switching scheme to bridge the omnipresent large bandwidth gaps in configurable systems. To showcase the proposed high-performance approach, the conditions to fully overlap communications with computations are investigated for important applications. The building blocks in the H-SLMD machine, such as high-performance and area-efficient register files, are presented in detail. The H-SLMD machine hierarchy is implemented on a host Dell workstation and the Annapolis Wildstar II FPGA board. Significant speedups have been achieved for matrix multiplication (MM), 2-dimensional discrete cosine transform (2D DCT) and 2-dimensional fast Fourier transform (2D FFT) which are used widely in science and engineering. In another FPGA-based programming paradigm, a high-level language (here ANSI C) can be used to program the FPGAs in a mode similar to that of the H-SIMD machine in terms of trying to minimize the effect of overheads. More specifically, a multi-threaded overlapping scheme is proposed to reduce as much as possible, or even completely hide, runtime FPGA reconfiguration overheads. Nevertheless, although the HLL-enabled reconfigurable machine allows software developers to customize FPGA functions easily, special architecture techniques are needed to achieve high-performance without significant penalty on area and clock frequency. Two important high-performance applications, matrix multiplication and image edge detection, are tested on the SRC-6 reconfigurable machine. The implemented algorithms are able to exploit the available data parallelism with independent functional units and application-specific cache support. Relevant performance and design tradeoffs are analyzed

Non-power-of-Two FFTs: Exploring the Flexibility of the Montium TP

Coarse-grain reconfigurable architectures, like the Montium TP, have proven to be a very successful approach for low-power and high-performance computation of regular digital signal processing algorithms. This paper presents the implementation of a class of non-power-of-two FFTs to discover the limitations and Flexibility of the Montium TP for less regular algorithms. A non-power-of-two FFT is less regular compared to a traditional power-of-two FFT. The results of the implementation show the processing time, accuracy, energy consumption and Flexibility of the implementation

Compressive Sensing Using Iterative Hard Thresholding with Low Precision Data Representation: Theory and Applications

Modern scientific instruments produce vast amounts of data, which can overwhelm the processing ability of computer systems. Lossy compression of data is an intriguing solution, but comes with its own drawbacks, such as potential signal loss, and the need for careful optimization of the compression ratio. In this work, we focus on a setting where this problem is especially acute: compressive sensing frameworks for interferometry and medical imaging. We ask the following question: can the precision of the data representation be lowered for all inputs, with recovery guarantees and practical performance? Our first contribution is a theoretical analysis of the normalized Iterative Hard Thresholding (IHT) algorithm when all input data, meaning both the measurement matrix and the observation vector are quantized aggressively. We present a variant of low precision normalized {IHT} that, under mild conditions, can still provide recovery guarantees. The second contribution is the application of our quantization framework to radio astronomy and magnetic resonance imaging. We show that lowering the precision of the data can significantly accelerate image recovery. We evaluate our approach on telescope data and samples of brain images using CPU and FPGA implementations achieving up to a 9x speed-up with negligible loss of recovery quality.Comment: 19 pages, 5 figures, 1 table, in IEEE Transactions on Signal Processin

Hardware-Efficient Structure of the Accelerating Module for Implementation of Convolutional Neural Network Basic Operation

This paper presents a structural design of the hardware-efficient module for implementation of convolution neural network (CNN) basic operation with reduced implementation complexity. For this purpose we utilize some modification of the Winograd minimal filtering method as well as computation vectorization principles. This module calculate inner products of two consecutive segments of the original data sequence, formed by a sliding window of length 3, with the elements of a filter impulse response. The fully parallel structure of the module for calculating these two inner products, based on the implementation of a naive method of calculation, requires 6 binary multipliers and 4 binary adders. The use of the Winograd minimal filtering method allows to construct a module structure that requires only 4 binary multipliers and 8 binary adders. Since a high-performance convolutional neural network can contain tens or even hundreds of such modules, such a reduction can have a significant effect.Comment: 3 pages, 5 figure

System-on-chip Computing and Interconnection Architectures for Telecommunications and Signal Processing

This dissertation proposes novel architectures and design techniques targeting SoC building blocks for telecommunications and signal processing applications. Hardware implementation of Low-Density Parity-Check decoders is approached at both the algorithmic and the architecture level. Low-Density Parity-Check codes are a promising coding scheme for future communication standards due to their outstanding error correction performance. This work proposes a methodology for analyzing effects of finite precision arithmetic on error correction performance and hardware complexity. The methodology is throughout employed for co-designing the decoder. First, a low-complexity check node based on the P-output decoding principle is designed and characterized on a CMOS standard-cells library. Results demonstrate implementation loss below 0.2 dB down to BER of 10^{-8} and a saving in complexity up to 59% with respect to other works in recent literature. High-throughput and low-latency issues are addressed with modified single-phase decoding schedules. A new "memory-aware" schedule is proposed requiring down to 20% of memory with respect to the traditional two-phase flooding decoding. Additionally, throughput is doubled and logic complexity reduced of 12%. These advantages are traded-off with error correction performance, thus making the solution attractive only for long codes, as those adopted in the DVB-S2 standard. The "layered decoding" principle is extended to those codes not specifically conceived for this technique. Proposed architectures exhibit complexity savings in the order of 40% for both area and power consumption figures, while implementation loss is smaller than 0.05 dB. Most modern communication standards employ Orthogonal Frequency Division Multiplexing as part of their physical layer. The core of OFDM is the Fast Fourier Transform and its inverse in charge of symbols (de)modulation. Requirements on throughput and energy efficiency call for FFT hardware implementation, while ubiquity of FFT suggests the design of parametric, re-configurable and re-usable IP hardware macrocells. In this context, this thesis describes an FFT/IFFT core compiler particularly suited for implementation of OFDM communication systems. The tool employs an accuracy-driven configuration engine which automatically profiles the internal arithmetic and generates a core with minimum operands bit-width and thus minimum circuit complexity. The engine performs a closed-loop optimization over three different internal arithmetic models (fixed-point, block floating-point and convergent block floating-point) using the numerical accuracy budget given by the user as a reference point. The flexibility and re-usability of the proposed macrocell are illustrated through several case studies which encompass all current state-of-the-art OFDM communications standards (WLAN, WMAN, xDSL, DVB-T/H, DAB and UWB). Implementations results are presented for two deep sub-micron standard-cells libraries (65 and 90 nm) and commercially available FPGA devices. Compared with other FFT core compilers, the proposed environment produces macrocells with lower circuit complexity and same system level performance (throughput, transform size and numerical accuracy). The final part of this dissertation focuses on the Network-on-Chip design paradigm whose goal is building scalable communication infrastructures connecting hundreds of core. A low-complexity link architecture for mesochronous on-chip communication is discussed. The link enables skew constraint looseness in the clock tree synthesis, frequency speed-up, power consumption reduction and faster back-end turnarounds. The proposed architecture reaches a maximum clock frequency of 1 GHz on 65 nm low-leakage CMOS standard-cells library. In a complex test case with a full-blown NoC infrastructure, the link overhead is only 3% of chip area and 0.5% of leakage power consumption. Finally, a new methodology, named metacoding, is proposed. Metacoding generates correct-by-construction technology independent RTL codebases for NoC building blocks. The RTL coding phase is abstracted and modeled with an Object Oriented framework, integrated within a commercial tool for IP packaging (Synopsys CoreTools suite). Compared with traditional coding styles based on pre-processor directives, metacoding produces 65% smaller codebases and reduces the configurations to verify up to three orders of magnitude