Estimation of Fiber Orientations Using Neighborhood Information

Data from diffusion magnetic resonance imaging (dMRI) can be used to reconstruct fiber tracts, for example, in muscle and white matter. Estimation of fiber orientations (FOs) is a crucial step in the reconstruction process and these estimates can be corrupted by noise. In this paper, a new method called Fiber Orientation Reconstruction using Neighborhood Information (FORNI) is described and shown to reduce the effects of noise and improve FO estimation performance by incorporating spatial consistency. FORNI uses a fixed tensor basis to model the diffusion weighted signals, which has the advantage of providing an explicit relationship between the basis vectors and the FOs. FO spatial coherence is encouraged using weighted l1-norm regularization terms, which contain the interaction of directional information between neighbor voxels. Data fidelity is encouraged using a squared error between the observed and reconstructed diffusion weighted signals. After appropriate weighting of these competing objectives, the resulting objective function is minimized using a block coordinate descent algorithm, and a straightforward parallelization strategy is used to speed up processing. Experiments were performed on a digital crossing phantom, ex vivo tongue dMRI data, and in vivo brain dMRI data for both qualitative and quantitative evaluation. The results demonstrate that FORNI improves the quality of FO estimation over other state of the art algorithms.Comment: Journal paper accepted in Medical Image Analysis. 35 pages and 16 figure

DC-image for real time compressed video matching

This chapter presents a suggested framework for video matching based on local features extracted from the DC-image of MPEG compressed videos, without full decompression. In addition, the relevant arguments and supporting evidences are discussed. Several local feature detectors will be examined to select the best for matching using the DC-image. Two experiments are carried to support the above. The first is comparing between the DC-image and I-frame, in terms of matching performance and computation complexity. The second experiment compares between using local features and global features regarding compressed video matching with respect to the DC-image. The results confirmed that the use of DC-image, despite its highly reduced size, it is promising as it produces higher matching precision, compared to the full I-frame. Also, SIFT, as a local feature, outperforms most of the standard global features. On the other hand, its computation complexity is relatively higher, but it is still within the real-time margin which leaves a space for further optimizations that can be done to improve this computation complexity