13,019 research outputs found
Biological evolution through mutation, selection, and drift: An introductory review
Motivated by present activities in (statistical) physics directed towards
biological evolution, we review the interplay of three evolutionary forces:
mutation, selection, and genetic drift. The review addresses itself to
physicists and intends to bridge the gap between the biological and the
physical literature. We first clarify the terminology and recapitulate the
basic models of population genetics, which describe the evolution of the
composition of a population under the joint action of the various evolutionary
forces. Building on these foundations, we specify the ingredients explicitly,
namely, the various mutation models and fitness landscapes. We then review
recent developments concerning models of mutational degradation. These predict
upper limits for the mutation rate above which mutation can no longer be
controlled by selection, the most important phenomena being error thresholds,
Muller's ratchet, and mutational meltdowns. Error thresholds are deterministic
phenomena, whereas Muller's ratchet requires the stochastic component brought
about by finite population size. Mutational meltdowns additionally rely on an
explicit model of population dynamics, and describe the extinction of
populations. Special emphasis is put on the mutual relationship between these
phenomena. Finally, a few connections with the process of molecular evolution
are established.Comment: 62 pages, 6 figures, many reference
Genetic Algorithms in Time-Dependent Environments
The influence of time-dependent fitnesses on the infinite population dynamics
of simple genetic algorithms (without crossover) is analyzed. Based on general
arguments, a schematic phase diagram is constructed that allows one to
characterize the asymptotic states in dependence on the mutation rate and the
time scale of changes. Furthermore, the notion of regular changes is raised for
which the population can be shown to converge towards a generalized
quasispecies. Based on this, error thresholds and an optimal mutation rate are
approximately calculated for a generational genetic algorithm with a moving
needle-in-the-haystack landscape. The so found phase diagram is fully
consistent with our general considerations.Comment: 24 pages, 14 figures, submitted to the 2nd EvoNet Summerschoo
An Evolutionary Algorithm for the Estimation of Threshold Vector Error Correction Models
We develop an evolutionary algorithm to estimate Threshold Vector Error Correction models (TVECM) with more than two cointegrated variables. Since disregarding a threshold in cointegration models renders standard approaches to the estimation of the cointegration vectors inefficient, TVECM necessitate a simultaneous estimation of the cointegration vector(s) and the threshold. As far as two cointegrated variables are considered this is commonly achieved by a grid search. However, grid search quickly becomes computationally unfeasible if more than two variables are cointegrated. Therefore, the likelihood function has to be maximized using heuristic approaches. Depending on the precise problem structure the evolutionary approach developed in the present paper for this purpose saves 90 to 99 per cent of the computation time of a grid search.evolutionary strategy, genetic algorithm, TVECM
Multi-population methods with adaptive mutation for multi-modal optimization problems
open access journalThis paper presents an efficient scheme to locate multiple peaks on multi-modal optimization problems by using genetic algorithms (GAs). The premature convergence problem shows due to the loss of diversity, the multi-population technique can be applied to maintain the diversity in the population and the convergence capacity of GAs. The proposed scheme is the combination of multi-population with adaptive mutation operator, which determines two different mutation probabilities for different sites of the solutions. The probabilities are updated by the fitness and distribution of solutions in the search space during the evolution process. The experimental results demonstrate the performance of the proposed algorithm based on a set of benchmark problems in comparison with relevant algorithms
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