Chemoinformatics Research at the University of Sheffield: A History and Citation Analysis

This paper reviews the work of the Chemoinformatics Research Group in the Department of Information Studies at the University of Sheffield, focusing particularly on the work carried out in the period 1985-2002. Four major research areas are discussed, these involving the development of methods for: substructure searching in databases of three-dimensional structures, including both rigid and flexible molecules; the representation and searching of the Markush structures that occur in chemical patents; similarity searching in databases of both two-dimensional and three-dimensional structures; and compound selection and the design of combinatorial libraries. An analysis of citations to 321 publications from the Group shows that it attracted a total of 3725 residual citations during the period 1980-2002. These citations appeared in 411 different journals, and involved 910 different citing organizations from 54 different countries, thus demonstrating the widespread impact of the Group's work

Learning Temporal Alignment Uncertainty for Efficient Event Detection

In this paper we tackle the problem of efficient video event detection. We argue that linear detection functions should be preferred in this regard due to their scalability and efficiency during estimation and evaluation. A popular approach in this regard is to represent a sequence using a bag of words (BOW) representation due to its: (i) fixed dimensionality irrespective of the sequence length, and (ii) its ability to compactly model the statistics in the sequence. A drawback to the BOW representation, however, is the intrinsic destruction of the temporal ordering information. In this paper we propose a new representation that leverages the uncertainty in relative temporal alignments between pairs of sequences while not destroying temporal ordering. Our representation, like BOW, is of a fixed dimensionality making it easily integrated with a linear detection function. Extensive experiments on CK+, 6DMG, and UvA-NEMO databases show significant performance improvements across both isolated and continuous event detection tasks.Comment: Appeared in DICTA 2015, 8 page

A Survey on Array Storage, Query Languages, and Systems

Since scientific investigation is one of the most important providers of massive amounts of ordered data, there is a renewed interest in array data processing in the context of Big Data. To the best of our knowledge, a unified resource that summarizes and analyzes array processing research over its long existence is currently missing. In this survey, we provide a guide for past, present, and future research in array processing. The survey is organized along three main topics. Array storage discusses all the aspects related to array partitioning into chunks. The identification of a reduced set of array operators to form the foundation for an array query language is analyzed across multiple such proposals. Lastly, we survey real systems for array processing. The result is a thorough survey on array data storage and processing that should be consulted by anyone interested in this research topic, independent of experience level. The survey is not complete though. We greatly appreciate pointers towards any work we might have forgotten to mention.Comment: 44 page

Comparison Of Modified Dual Ternary Indexing And Multi-Key Hashing Algorithms For Music Information Retrieval

In this work we have compared two indexing algorithms that have been used to index and retrieve Carnatic music songs. We have compared a modified algorithm of the Dual ternary indexing algorithm for music indexing and retrieval with the multi-key hashing indexing algorithm proposed by us. The modification in the dual ternary algorithm was essential to handle variable length query phrase and to accommodate features specific to Carnatic music. The dual ternary indexing algorithm is adapted for Carnatic music by segmenting using the segmentation technique for Carnatic music. The dual ternary algorithm is compared with the multi-key hashing algorithm designed by us for indexing and retrieval in which features like MFCC, spectral flux, melody string and spectral centroid are used as features for indexing data into a hash table. The way in which collision resolution was handled by this hash table is different than the normal hash table approaches. It was observed that multi-key hashing based retrieval had a lesser time complexity than dual-ternary based indexing The algorithms were also compared for their precision and recall in which multi-key hashing had a better recall than modified dual ternary indexing for the sample data considered.Comment: 11 pages, 5 figure