Emergence of active nematic behaviour in monolayers of isotropic cells

There is now growing evidence of the emergence and biological functionality of liquid crystal features, including nematic order and topological defects, in cellular tissues. However, how such features that intrinsically rely on particle elongation, emerge in monolayers of cells with isotropic shapes is an outstanding question. In this article we present a minimal model of cellular monolayers based on cell deformation and force transmission at the cell-cell interface that explains the formation of topological defects and captures the flow-field and stress patterns around them. By including mechanical properties at the individual cell level, we further show that the instability that drives the formation of topological defects and leads to active turbulence, emerges from a feedback between shape deformation and active driving. The model allows us to suggest new explanations for experimental observations in tissue mechanics, and to propose designs for future experiments

Modelling of vorticity, sound and their interaction in two-dimensional superfluids

Vorticity in two-dimensional superfluids is subject to intense research efforts due to its role in quantum turbulence, dissipation and the BKT phase transition. Interaction of sound and vortices is of broad importance in Bose-Einstein condensates and superfluid helium [1-4]. However, both the modelling of the vortex flow field and of its interaction with sound are complicated hydrodynamic problems, with analytic solutions only available in special cases. In this work, we develop methods to compute both the vortex and sound flow fields in an arbitrary two-dimensional domain. Further, we analyse the dispersive interaction of vortices with sound modes in a two-dimensional superfluid and develop a model that quantifies this interaction for any vortex distribution on any two-dimensional bounded domain, possibly non-simply connected, exploiting analogies with fluid dynamics of an ideal gas and electrostatics. As an example application we use this technique to propose an experiment that should be able to unambiguously detect single circulation quanta in a helium thin film.Comment: 23 pages, 8 figure

Simple mechanisms that impede the Berry phase identification from magneto-oscillations

The phase of quantum magneto-oscillations is often associated with the Berry phase and is widely used to argue in favor of topological nontriviality of the system (Berry phase $2\pi n+\pi$). Nevertheless, the experimentally determined value may deviate from $2\pi n+\pi$ arbitrarily, therefore more care should be made analyzing the phase of magneto-oscillations to distinguish trivial systems from nontrivial. In this paper we suggest two simple mechanisms dramatically affecting the experimentally observed value of the phase in three-dimensional topological insulators: (i) magnetic field dependence of the chemical potential, and (ii) possible nonuniformity of the system. These mechanisms are not limited to topological insulators and can be extended to other topologically trivial and non-trivial systems.Comment: 9 pages, 4 figures, in published version the title was change

Local, Smooth, and Consistent Jacobi Set Simplification

The relation between two Morse functions defined on a common domain can be studied in terms of their Jacobi set. The Jacobi set contains points in the domain where the gradients of the functions are aligned. Both the Jacobi set itself as well as the segmentation of the domain it induces have shown to be useful in various applications. Unfortunately, in practice functions often contain noise and discretization artifacts causing their Jacobi set to become unmanageably large and complex. While there exist techniques to simplify Jacobi sets, these are unsuitable for most applications as they lack fine-grained control over the process and heavily restrict the type of simplifications possible. In this paper, we introduce a new framework that generalizes critical point cancellations in scalar functions to Jacobi sets in two dimensions. We focus on simplifications that can be realized by smooth approximations of the corresponding functions and show how this implies simultaneously simplifying contiguous subsets of the Jacobi set. These extended cancellations form the atomic operations in our framework, and we introduce an algorithm to successively cancel subsets of the Jacobi set with minimal modifications according to some user-defined metric. We prove that the algorithm is correct and terminates only once no more local, smooth and consistent simplifications are possible. We disprove a previous claim on the minimal Jacobi set for manifolds with arbitrary genus and show that for simply connected domains, our algorithm reduces a given Jacobi set to its simplest configuration.Comment: 24 pages, 19 figure