40,179 research outputs found
The Physics of Living Neural Networks
Improvements in technique in conjunction with an evolution of the theoretical
and conceptual approach to neuronal networks provide a new perspective on
living neurons in culture. Organization and connectivity are being measured
quantitatively along with other physical quantities such as information, and
are being related to function. In this review we first discuss some of these
advances, which enable elucidation of structural aspects. We then discuss two
recent experimental models that yield some conceptual simplicity. A
one-dimensional network enables precise quantitative comparison to analytic
models, for example of propagation and information transport. A two-dimensional
percolating network gives quantitative information on connectivity of cultured
neurons. The physical quantities that emerge as essential characteristics of
the network in vitro are propagation speeds, synaptic transmission, information
creation and capacity. Potential application to neuronal devices is discussed.Comment: PACS: 87.18.Sn, 87.19.La, 87.80.-y, 87.80.Xa, 64.60.Ak Keywords:
complex systems, neuroscience, neural networks, transport of information,
neural connectivity, percolation
http://www.weizmann.ac.il/complex/tlusty/papers/PhysRep2007.pdf
http://www.weizmann.ac.il/complex/EMoses/pdf/PhysRep-448-56.pd
Flexible couplings: diffusing neuromodulators and adaptive robotics
Recent years have seen the discovery of freely diffusing gaseous neurotransmitters, such as nitric oxide (NO), in biological nervous systems. A type of artificial neural network (ANN) inspired by such gaseous signaling, the GasNet, has previously been shown to be more evolvable than traditional ANNs when used as an artificial nervous system in an evolutionary robotics setting, where evolvability means consistent speed to very good solutions¿here, appropriate sensorimotor behavior-generating systems. We present two new versions of the GasNet, which take further inspiration from the properties of neuronal gaseous signaling. The plexus model is inspired by the extraordinary NO-producing cortical plexus structure of neural fibers and the properties of the diffusing NO signal it generates. The receptor model is inspired by the mediating action of neurotransmitter receptors. Both models are shown to significantly further improve evolvability. We describe a series of analyses suggesting that the reasons for the increase in evolvability are related to the flexible loose coupling of distinct signaling mechanisms, one ¿chemical¿ and one ¿electrical.
Fractals in the Nervous System: conceptual Implications for Theoretical Neuroscience
This essay is presented with two principal objectives in mind: first, to
document the prevalence of fractals at all levels of the nervous system, giving
credence to the notion of their functional relevance; and second, to draw
attention to the as yet still unresolved issues of the detailed relationships
among power law scaling, self-similarity, and self-organized criticality. As
regards criticality, I will document that it has become a pivotal reference
point in Neurodynamics. Furthermore, I will emphasize the not yet fully
appreciated significance of allometric control processes. For dynamic fractals,
I will assemble reasons for attributing to them the capacity to adapt task
execution to contextual changes across a range of scales. The final Section
consists of general reflections on the implications of the reviewed data, and
identifies what appear to be issues of fundamental importance for future
research in the rapidly evolving topic of this review
Metrics for Graph Comparison: A Practitioner's Guide
Comparison of graph structure is a ubiquitous task in data analysis and
machine learning, with diverse applications in fields such as neuroscience,
cyber security, social network analysis, and bioinformatics, among others.
Discovery and comparison of structures such as modular communities, rich clubs,
hubs, and trees in data in these fields yields insight into the generative
mechanisms and functional properties of the graph.
Often, two graphs are compared via a pairwise distance measure, with a small
distance indicating structural similarity and vice versa. Common choices
include spectral distances (also known as distances) and distances
based on node affinities. However, there has of yet been no comparative study
of the efficacy of these distance measures in discerning between common graph
topologies and different structural scales.
In this work, we compare commonly used graph metrics and distance measures,
and demonstrate their ability to discern between common topological features
found in both random graph models and empirical datasets. We put forward a
multi-scale picture of graph structure, in which the effect of global and local
structure upon the distance measures is considered. We make recommendations on
the applicability of different distance measures to empirical graph data
problem based on this multi-scale view. Finally, we introduce the Python
library NetComp which implements the graph distances used in this work
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