Managing scientific data

Data-oriented scientific processes depend on fast, accurate analysis of experimental data generated through empirical observation and simulation. However, scientists are increasingly overwhelmed by the volume of data produced by their own experiments. With improving instrument precision and the complexity of the simulated models, data overload promises to only get worse. The inefficiency of existing database management systems (DBMSs) for addressing the requirements of scientists has led to many application-specific systems. Unlike their general-purpose counterparts, these systems require more resources, hindering reuse of knowledge. Still, the data-management community aspires to general-purpose scientific data management. Here, we explore the most important requirements of such systems and the techniques being used to address them

Work flows in life science

The introduction of computer science technology in the life science domain has resulted in a new life science discipline called bioinformatics. Bioinformaticians are biologists who know how to apply computer science technology to perform computer based experiments, also known as in-silico or dry lab experiments. Various tools, such as databases, web applications and scripting languages, are used to design and run in-silico experiments. As the size and complexity of these experiments grow, new types of tools are required to design and execute the experiments and to analyse the results. Workflow systems promise to fulfill this role. The bioinformatician composes an experiment by using tools and web services as building blocks, and connecting them, often through a graphical user interface. Workflow systems, such as Taverna, provide access to up to a few thousand resources in a uniform way. Although workflow systems are intended to make the bioinformaticians' work easier, bioinformaticians experience difficulties in using them. This thesis is devoted to find out which problems bioinformaticians experience using workflow systems and to provide solutions for these problems.\u