A new genetic algorithm based on primal-dual chromosomes for royal road functions

Copyright @ 2001 University of LeicesterGenetic algorithms (GAs) have been broadly studied by a huge amount of researchers and there are many variations developed based on Holland’s simple genetic algorithm (SGA). Inspired by the idea of diploid genotype and dominance mechanisms that broadly exists in nature, we propose a primal-dual genetic algorithm (PDGA). PDGA operates on a pair of chromosomes that are primal-dual to each other in the sense of Hamming distance in genotype. We compare the performance of PDGA over SGA based on the Royal Road functions, which are specially designed for testing GA's performance. The experiment results show that PDGA outperforms SGA on the Royal Road functions for different performance measures.This work was supported by the University of Leicester Research Fund 2001 under Grant FP15004, UK

PDGA: The primal-dual genetic algorithm

Copyright @ 2003 IOS PressGenetic algorithms (GAs) are a class of search algorithms based on principles of natural evolution. Hence, incorporating mechanisms used in nature may improve the performance of GAs. In this paper inspired by the mechanisms of complementarity and dominance that broadly exist in nature, we present a new genetic algorithm — Primal-Dual Genetic Algorithm (PDGA). PDGA operates on a pair of chromosomes that are primal-dual to each other through the primal-dual mapping, which maps one to the other with a maximum distance away in a given distance space in genotype. The primal-dual mapping improves the exploration capacity of PDGA and thus its searching efficiency in the search space. To test the performance of PDGA, experiments were carried out to compare PDGA over traditional simple GA (SGA) and a peer GA, called Dual Genetic Algorithm (DGA), over a typical set of test problems. The experimental results demonstrate that PDGA outperforms both SGA and DGA on the test set. The results show that PDGA is a good candidate genetic algorithm

High-speed detection of emergent market clustering via an unsupervised parallel genetic algorithm

We implement a master-slave parallel genetic algorithm (PGA) with a bespoke log-likelihood fitness function to identify emergent clusters within price evolutions. We use graphics processing units (GPUs) to implement a PGA and visualise the results using disjoint minimal spanning trees (MSTs). We demonstrate that our GPU PGA, implemented on a commercially available general purpose GPU, is able to recover stock clusters in sub-second speed, based on a subset of stocks in the South African market. This represents a pragmatic choice for low-cost, scalable parallel computing and is significantly faster than a prototype serial implementation in an optimised C-based fourth-generation programming language, although the results are not directly comparable due to compiler differences. Combined with fast online intraday correlation matrix estimation from high frequency data for cluster identification, the proposed implementation offers cost-effective, near-real-time risk assessment for financial practitioners.Comment: 10 pages, 5 figures, 4 tables, More thorough discussion of implementatio

Non-stationary problem optimization using the primal-dual genetic algorithm

This article is posted here with permission from IEEE - Copyright @ 2003 IEEEGenetic algorithms (GAs) have been widely used for stationary optimization problems where the fitness landscape does not change during the computation. However, the environments of real world problems may change over time, which puts forward serious challenge to traditional GAs. In this paper, we introduce the application of a new variation of GA called the primal-dual genetic algorithm (PDGA) for problem optimization in nonstationary environments. Inspired by the complementarity and dominance mechanisms in nature, PDGA operates on a pair of chromosomes that are primal-dual to each other in the sense of maximum distance in genotype in a given distance space. This paper investigates an important aspect of PDGA, its adaptability to dynamic environments. A set of dynamic problems are generated from a set of stationary benchmark problems using a dynamic problem generating technique proposed in this paper. Experimental study over these dynamic problems suggests that PDGA can solve complex dynamic problems more efficiently than traditional GA and a peer GA, the dual genetic algorithm. The experimental results show that PDGA has strong viability and robustness in dynamic environments

Multi-criteria Evolution of Neural Network Topologies: Balancing Experience and Performance in Autonomous Systems

Majority of Artificial Neural Network (ANN) implementations in autonomous systems use a fixed/user-prescribed network topology, leading to sub-optimal performance and low portability. The existing neuro-evolution of augmenting topology or NEAT paradigm offers a powerful alternative by allowing the network topology and the connection weights to be simultaneously optimized through an evolutionary process. However, most NEAT implementations allow the consideration of only a single objective. There also persists the question of how to tractably introduce topological diversification that mitigates overfitting to training scenarios. To address these gaps, this paper develops a multi-objective neuro-evolution algorithm. While adopting the basic elements of NEAT, important modifications are made to the selection, speciation, and mutation processes. With the backdrop of small-robot path-planning applications, an experience-gain criterion is derived to encapsulate the amount of diverse local environment encountered by the system. This criterion facilitates the evolution of genes that support exploration, thereby seeking to generalize from a smaller set of mission scenarios than possible with performance maximization alone. The effectiveness of the single-objective (optimizing performance) and the multi-objective (optimizing performance and experience-gain) neuro-evolution approaches are evaluated on two different small-robot cases, with ANNs obtained by the multi-objective optimization observed to provide superior performance in unseen scenarios

Multi-membership gene regulation in pathway based microarray analysis

This article is available through the Brunel Open Access Publishing Fund. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.Background: Gene expression analysis has been intensively researched for more than a decade. Recently, there has been elevated interest in the integration of microarray data analysis with other types of biological knowledge in a holistic analytical approach. We propose a methodology that can be facilitated for pathway based microarray data analysis, based on the observation that a substantial proportion of genes present in biochemical pathway databases are members of a number of distinct pathways. Our methodology aims towards establishing the state of individual pathways, by identifying those truly affected by the experimental conditions based on the behaviour of such genes. For that purpose it considers all the pathways in which a gene participates and the general census of gene expression per pathway. Results: We utilise hill climbing, simulated annealing and a genetic algorithm to analyse the consistency of the produced results, through the application of fuzzy adjusted rand indexes and hamming distance. All algorithms produce highly consistent genes to pathways allocations, revealing the contribution of genes to pathway functionality, in agreement with current pathway state visualisation techniques, with the simulated annealing search proving slightly superior in terms of efficiency. Conclusions: We show that the expression values of genes, which are members of a number of biochemical pathways or modules, are the net effect of the contribution of each gene to these biochemical processes. We show that by manipulating the pathway and module contribution of such genes to follow underlying trends we can interpret microarray results centred on the behaviour of these genes.The work was sponsored by the studentship scheme of the School of Information Systems, Computing and Mathematics, Brunel Universit

Optimisation of Mobile Communication Networks - OMCO NET

The mini conference “Optimisation of Mobile Communication Networks” focuses on advanced methods for search and optimisation applied to wireless communication networks. It is sponsored by Research & Enterprise Fund Southampton Solent University. The conference strives to widen knowledge on advanced search methods capable of optimisation of wireless communications networks. The aim is to provide a forum for exchange of recent knowledge, new ideas and trends in this progressive and challenging area. The conference will popularise new successful approaches on resolving hard tasks such as minimisation of transmit power, cooperative and optimal routing

The Self-Organization of Interaction Networks for Nature-Inspired Optimization

Over the last decade, significant progress has been made in understanding complex biological systems, however there have been few attempts at incorporating this knowledge into nature inspired optimization algorithms. In this paper, we present a first attempt at incorporating some of the basic structural properties of complex biological systems which are believed to be necessary preconditions for system qualities such as robustness. In particular, we focus on two important conditions missing in Evolutionary Algorithm populations; a self-organized definition of locality and interaction epistasis. We demonstrate that these two features, when combined, provide algorithm behaviors not observed in the canonical Evolutionary Algorithm or in Evolutionary Algorithms with structured populations such as the Cellular Genetic Algorithm. The most noticeable change in algorithm behavior is an unprecedented capacity for sustainable coexistence of genetically distinct individuals within a single population. This capacity for sustained genetic diversity is not imposed on the population but instead emerges as a natural consequence of the dynamics of the system