Deep Learning versus Classical Regression for Brain Tumor Patient Survival Prediction

Deep learning for regression tasks on medical imaging data has shown promising results. However, compared to other approaches, their power is strongly linked to the dataset size. In this study, we evaluate 3D-convolutional neural networks (CNNs) and classical regression methods with hand-crafted features for survival time regression of patients with high grade brain tumors. The tested CNNs for regression showed promising but unstable results. The best performing deep learning approach reached an accuracy of 51.5% on held-out samples of the training set. All tested deep learning experiments were outperformed by a Support Vector Classifier (SVC) using 30 radiomic features. The investigated features included intensity, shape, location and deep features. The submitted method to the BraTS 2018 survival prediction challenge is an ensemble of SVCs, which reached a cross-validated accuracy of 72.2% on the BraTS 2018 training set, 57.1% on the validation set, and 42.9% on the testing set. The results suggest that more training data is necessary for a stable performance of a CNN model for direct regression from magnetic resonance images, and that non-imaging clinical patient information is crucial along with imaging information.Comment: Contribution to The International Multimodal Brain Tumor Segmentation (BraTS) Challenge 2018, survival prediction tas

Inferring transportation modes from GPS trajectories using a convolutional neural network

Identifying the distribution of users' transportation modes is an essential part of travel demand analysis and transportation planning. With the advent of ubiquitous GPS-enabled devices (e.g., a smartphone), a cost-effective approach for inferring commuters' mobility mode(s) is to leverage their GPS trajectories. A majority of studies have proposed mode inference models based on hand-crafted features and traditional machine learning algorithms. However, manual features engender some major drawbacks including vulnerability to traffic and environmental conditions as well as possessing human's bias in creating efficient features. One way to overcome these issues is by utilizing Convolutional Neural Network (CNN) schemes that are capable of automatically driving high-level features from the raw input. Accordingly, in this paper, we take advantage of CNN architectures so as to predict travel modes based on only raw GPS trajectories, where the modes are labeled as walk, bike, bus, driving, and train. Our key contribution is designing the layout of the CNN's input layer in such a way that not only is adaptable with the CNN schemes but represents fundamental motion characteristics of a moving object including speed, acceleration, jerk, and bearing rate. Furthermore, we ameliorate the quality of GPS logs through several data preprocessing steps. Using the clean input layer, a variety of CNN configurations are evaluated to achieve the best CNN architecture. The highest accuracy of 84.8% has been achieved through the ensemble of the best CNN configuration. In this research, we contrast our methodology with traditional machine learning algorithms as well as the seminal and most related studies to demonstrate the superiority of our framework.Comment: 12 pages, 3 figures, 7 tables, Transportation Research Part C: Emerging Technologie

An Efficient Approach for Polyps Detection in Endoscopic Videos Based on Faster R-CNN

Polyp has long been considered as one of the major etiologies to colorectal cancer which is a fatal disease around the world, thus early detection and recognition of polyps plays a crucial role in clinical routines. Accurate diagnoses of polyps through endoscopes operated by physicians becomes a challenging task not only due to the varying expertise of physicians, but also the inherent nature of endoscopic inspections. To facilitate this process, computer-aid techniques that emphasize fully-conventional image processing and novel machine learning enhanced approaches have been dedicatedly designed for polyp detection in endoscopic videos or images. Among all proposed algorithms, deep learning based methods take the lead in terms of multiple metrics in evolutions for algorithmic performance. In this work, a highly effective model, namely the faster region-based convolutional neural network (Faster R-CNN) is implemented for polyp detection. In comparison with the reported results of the state-of-the-art approaches on polyps detection, extensive experiments demonstrate that the Faster R-CNN achieves very competing results, and it is an efficient approach for clinical practice.Comment: 6 pages, 10 figures,2018 International Conference on Pattern Recognitio

A Survey on Deep Learning in Medical Image Analysis

Deep learning algorithms, in particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images. This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year. We survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks and provide concise overviews of studies per application area. Open challenges and directions for future research are discussed.Comment: Revised survey includes expanded discussion section and reworked introductory section on common deep architectures. Added missed papers from before Feb 1st 201

Deep HMResNet Model for Human Activity-Aware Robotic Systems

Endowing the robotic systems with cognitive capabilities for recognizing daily activities of humans is an important challenge, which requires sophisticated and novel approaches. Most of the proposed approaches explore pattern recognition techniques which are generally based on hand-crafted features or learned features. In this paper, a novel Hierarchal Multichannel Deep Residual Network (HMResNet) model is proposed for robotic systems to recognize daily human activities in the ambient environments. The introduced model is comprised of multilevel fusion layers. The proposed Multichannel 1D Deep Residual Network model is, at the features level, combined with a Bottleneck MLP neural network to automatically extract robust features regardless of the hardware configuration and, at the decision level, is fully connected with an MLP neural network to recognize daily human activities. Empirical experiments on real-world datasets and an online demonstration are used for validating the proposed model. Results demonstrated that the proposed model outperforms the baseline models in daily human activity recognition.Comment: Presented at AI-HRI AAAI-FSS, 2018 (arXiv:1809.06606