New techniques for graph algorithms

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2011.Cataloged from PDF version of thesis.Includes bibliographical references (p. 181-192).The growing need to deal efficiently with massive computing tasks prompts us to consider the following question: How well can we solve fundamental optimization problems if our algorithms have to run really quickly? The motivation for the research presented in this thesis stems from addressing the above question in the context of algorithmic graph theory. To pursue this direction, we develop a toolkit that combines a diverse set of modern algorithmic techniques, including sparsification, low-stretch spanning trees, the multiplicative-weights-update method, dynamic graph algorithms, fast Laplacian system solvers, and tools of spectral graph theory. Using this toolkit, we obtain improved algorithms for several basic graph problems including: -- The Maximum s-t Flow and Minimum s-t Cut Problems. We develop a new approach to computing (1 - [epsilon])-approximately maximum s-t flow and (1 + [epsilon])-approximately minimum s-t cut in undirected graphs that gives the fastest known algorithms for these tasks. These algorithms are the first ones to improve the long-standing bound of O(n3/2') running time on sparse graphs; -- Multicommodity Flow Problems. We set forth a new method of speeding up the existing approximation algorithms for multicommodity flow problems, and use it to obtain the fastest-known (1 - [epsilon])-approximation algorithms for these problems. These results improve upon the best previously known bounds by a factor of roughly [omega](m/n), and make the resulting running times essentially match the [omega](mn) "flow-decomposition barrier" that is a natural obstacle to all the existing approaches; -- " Undirected (Multi-)Cut-Based Minimization Problems. We develop a general framework for designing fast approximation algorithms for (multi-)cutbased minimization problems in undirected graphs. Applying this framework leads to the first algorithms for several fundamental graph partitioning primitives, such as the (generalized) sparsest cut problem and the balanced separator problem, that run in close to linear time while still providing polylogarithmic approximation guarantees; -- The Asymmetric Traveling Salesman Problem. We design an O( )- approximation algorithm for the classical problem of combinatorial optimization: the asymmetric traveling salesman problem. This is the first asymptotic improvement over the long-standing approximation barrier of e(log n) for this problem; -- Random Spanning Tree Generation. We improve the bound on the time needed to generate an uniform random spanning tree of an undirected graph.by Aleksander Mądry.Ph.D

Probabilistic Spectral Sparsification In Sublinear Time

In this paper, we introduce a variant of spectral sparsification, called probabilistic $(\varepsilon,\delta)$-spectral sparsification. Roughly speaking, it preserves the cut value of any cut $(S,S^{c})$ with an $1\pm\varepsilon$ multiplicative error and a $\delta\left|S\right|$ additive error. We show how to produce a probabilistic $(\varepsilon,\delta)$-spectral sparsifier with $O(n\log n/\varepsilon^{2})$ edges in time $\tilde{O}(n/\varepsilon^{2}\delta)$ time for unweighted undirected graph. This gives fastest known sub-linear time algorithms for different cut problems on unweighted undirected graph such as - An $\tilde{O}(n/OPT+n^{3/2+t})$ time $O(\sqrt{\log n/t})$-approximation algorithm for the sparsest cut problem and the balanced separator problem. - A $n^{1+o(1)}/\varepsilon^{4}$ time approximation minimum s-t cut algorithm with an $\varepsilon n$ additive error

Beyond Bidimensionality: Parameterized Subexponential Algorithms on Directed Graphs

We develop two different methods to achieve subexponential time parameterized algorithms for problems on sparse directed graphs. We exemplify our approaches with two well studied problems. For the first problem, {\sc $k$-Leaf Out-Branching}, which is to find an oriented spanning tree with at least $k$ leaves, we obtain an algorithm solving the problem in time $2^{O(\sqrt{k} \log k)} n+ n^{O(1)}$ on directed graphs whose underlying undirected graph excludes some fixed graph $H$ as a minor. For the special case when the input directed graph is planar, the running time can be improved to $2^{O(\sqrt{k})}n + n^{O(1)}$. The second example is a generalization of the {\sc Directed Hamiltonian Path} problem, namely {\sc $k$-Internal Out-Branching}, which is to find an oriented spanning tree with at least $k$ internal vertices. We obtain an algorithm solving the problem in time $2^{O(\sqrt{k} \log k)} + n^{O(1)}$ on directed graphs whose underlying undirected graph excludes some fixed apex graph $H$ as a minor. Finally, we observe that for any $\epsilon>0$, the {\sc $k$-Directed Path} problem is solvable in time $O((1+\epsilon)^k n^{f(\epsilon)})$, where $f$ is some function of \ve. Our methods are based on non-trivial combinations of obstruction theorems for undirected graphs, kernelization, problem specific combinatorial structures and a layering technique similar to the one employed by Baker to obtain PTAS for planar graphs

Cut-Matching Games on Directed Graphs

We give O(log^2 n)-approximation algorithm based on the cut-matching framework of [10, 13, 14] for computing the sparsest cut on directed graphs. Our algorithm uses only O(log^2 n) single commodity max-flow computations and thus breaks the multicommodity-flow barrier for computing the sparsest cut on directed graph

Connectivity measures for internet topologies.

The topology of the Internet has initially been modelled as an undirected graph, where vertices correspond to so-called Autonomous Systems (ASs),and edges correspond to physical links between pairs of ASs. However, in order to capture the impact of routing policies, it has recently become apparent that one needs to classify the edges according to the existing economic relationships (customer-provider, peer-to-peer or siblings) between the ASs. This leads to a directed graph model in which traffic can be sent only along so-called valley-free paths. Four different algorithms have been proposed in the literature for inferring AS relationships using publicly available data from routing tables. We investigate the differences in the graph models produced by these algorithms, focussing on connectivity measures. To this aim, we compute the maximum number of vertex-disjoint valley-free paths between ASs as well as the size of a minimum cut separating a pair of ASs. Although these problems are solvable in polynomial time for ordinary graphs, they are NP-hard in our setting. We formulate the two problems as integer programs, and we propose a number of exact algorithms for solving them. For the problem of finding the maximum number of vertex-disjoint paths, we discuss two algorithms; the first one is a branch-and-price algorithm based on the IP formulation, and the second algorithm is a non LP based branch-and-bound algorithm. For the problem of finding minimum cuts we use a branch-and-cut algo rithm, based on the IP formulation of this problem. Using these algorithms, we obtain exact solutions for both problems in reasonable time. It turns out that there is a large gap in terms of the connectivity measures between the undirected and directed models. This finding supports our conclusion that economic relationships need to be taken into account when building a topology of the Internet.Research; Internet;

JGraphT -- A Java library for graph data structures and algorithms

Mathematical software and graph-theoretical algorithmic packages to efficiently model, analyze and query graphs are crucial in an era where large-scale spatial, societal and economic network data are abundantly available. One such package is JGraphT, a programming library which contains very efficient and generic graph data-structures along with a large collection of state-of-the-art algorithms. The library is written in Java with stability, interoperability and performance in mind. A distinctive feature of this library is the ability to model vertices and edges as arbitrary objects, thereby permitting natural representations of many common networks including transportation, social and biological networks. Besides classic graph algorithms such as shortest-paths and spanning-tree algorithms, the library contains numerous advanced algorithms: graph and subgraph isomorphism; matching and flow problems; approximation algorithms for NP-hard problems such as independent set and TSP; and several more exotic algorithms such as Berge graph detection. Due to its versatility and generic design, JGraphT is currently used in large-scale commercial, non-commercial and academic research projects. In this work we describe in detail the design and underlying structure of the library, and discuss its most important features and algorithms. A computational study is conducted to evaluate the performance of JGraphT versus a number of similar libraries. Experiments on a large number of graphs over a variety of popular algorithms show that JGraphT is highly competitive with other established libraries such as NetworkX or the BGL.Comment: Major Revisio