8,558 research outputs found
A Comparison of Two Shallow Water Models with Non-Conforming Adaptive Grids: classical tests
In an effort to study the applicability of adaptive mesh refinement (AMR)
techniques to atmospheric models an interpolation-based spectral element
shallow water model on a cubed-sphere grid is compared to a block-structured
finite volume method in latitude-longitude geometry. Both models utilize a
non-conforming adaptation approach which doubles the resolution at fine-coarse
mesh interfaces. The underlying AMR libraries are quad-tree based and ensure
that neighboring regions can only differ by one refinement level.
The models are compared via selected test cases from a standard test suite
for the shallow water equations. They include the advection of a cosine bell, a
steady-state geostrophic flow, a flow over an idealized mountain and a
Rossby-Haurwitz wave. Both static and dynamics adaptations are evaluated which
reveal the strengths and weaknesses of the AMR techniques. Overall, the AMR
simulations show that both models successfully place static and dynamic
adaptations in local regions without requiring a fine grid in the global
domain. The adaptive grids reliably track features of interests without visible
distortions or noise at mesh interfaces. Simple threshold adaptation criteria
for the geopotential height and the relative vorticity are assessed.Comment: 25 pages, 11 figures, preprin
Afivo: a framework for quadtree/octree AMR with shared-memory parallelization and geometric multigrid methods
Afivo is a framework for simulations with adaptive mesh refinement (AMR) on
quadtree (2D) and octree (3D) grids. The framework comes with a geometric
multigrid solver, shared-memory (OpenMP) parallelism and it supports output in
Silo and VTK file formats. Afivo can be used to efficiently simulate AMR
problems with up to about unknowns on desktops, workstations or single
compute nodes. For larger problems, existing distributed-memory frameworks are
better suited. The framework has no built-in functionality for specific physics
applications, so users have to implement their own numerical methods. The
included multigrid solver can be used to efficiently solve elliptic partial
differential equations such as Poisson's equation. Afivo's design was kept
simple, which in combination with the shared-memory parallelism facilitates
modification and experimentation with AMR algorithms. The framework was already
used to perform 3D simulations of streamer discharges, which required tens of
millions of cells
Optimisation of patch distribution strategies for AMR applications
As core counts increase in the world's most powerful supercomputers, applications are becoming limited not only by computational power, but also by data availability. In the race to exascale, efficient and effective communication policies are key to achieving optimal application performance. Applications using adaptive mesh refinement (AMR) trade off communication for computational load balancing, to enable the focused computation of specific areas of interest. This class of application is particularly susceptible to the communication performance of the underlying architectures, and are inherently difficult to scale efficiently. In this paper we present a study of the effect of patch distribution strategies on the scalability of an AMR code. We demonstrate the significance of patch placement on communication overheads, and by balancing the computation and communication costs of patches, we develop a scheme to optimise performance of a specific, industry-strength, benchmark application
- …