Error mining in parsing results

International audienceWe introduce an error mining technique for automatically detecting errors in resources that are used in parsing systems. We applied this technique on parsing results produced on several million words by two distinct parsing systems, which share the syntactic lexicon and the pre-parsing processing chain. We were thus able to identify missing and erroneous information in these resources

Preparing, restructuring, and augmenting a French treebank: lexicalised parsers or coherent treebanks?

We present the Modified French Treebank (MFT), a completely revamped French Treebank, derived from the Paris 7 Treebank (P7T), which is cleaner, more coherent, has several transformed structures, and introduces new linguistic analyses. To determine the effect of these changes, we investigate how theMFT fares in statistical parsing. Probabilistic parsers trained on the MFT training set (currently 3800 trees) already perform better than their counterparts trained on five times the P7T data (18,548 trees), providing an extreme example of the importance of data quality over quantity in statistical parsing. Moreover, regression analysis on the learning curve of parsers trained on the MFT lead to the prediction that parsers trained on the full projected 18,548 tree MFT training set will far outscore their counterparts trained on the full P7T. These analyses also show how problematic data can lead to problematic conclusions–in particular, we find that lexicalisation in the probabilistic parsing of French is probably not as crucial as was once thought (Arun and Keller (2005))

From Query to Usable Code: An Analysis of Stack Overflow Code Snippets

Enriched by natural language texts, Stack Overflow code snippets are an invaluable code-centric knowledge base of small units of source code. Besides being useful for software developers, these annotated snippets can potentially serve as the basis for automated tools that provide working code solutions to specific natural language queries. With the goal of developing automated tools with the Stack Overflow snippets and surrounding text, this paper investigates the following questions: (1) How usable are the Stack Overflow code snippets? and (2) When using text search engines for matching on the natural language questions and answers around the snippets, what percentage of the top results contain usable code snippets? A total of 3M code snippets are analyzed across four languages: C\#, Java, JavaScript, and Python. Python and JavaScript proved to be the languages for which the most code snippets are usable. Conversely, Java and C\# proved to be the languages with the lowest usability rate. Further qualitative analysis on usable Python snippets shows the characteristics of the answers that solve the original question. Finally, we use Google search to investigate the alignment of usability and the natural language annotations around code snippets, and explore how to make snippets in Stack Overflow an adequate base for future automatic program generation.Comment: 13th IEEE/ACM International Conference on Mining Software Repositories, 11 page

Lexical Adaptation of Link Grammar to the Biomedical Sublanguage: a Comparative Evaluation of Three Approaches

We study the adaptation of Link Grammar Parser to the biomedical sublanguage with a focus on domain terms not found in a general parser lexicon. Using two biomedical corpora, we implement and evaluate three approaches to addressing unknown words: automatic lexicon expansion, the use of morphological clues, and disambiguation using a part-of-speech tagger. We evaluate each approach separately for its effect on parsing performance and consider combinations of these approaches. In addition to a 45% increase in parsing efficiency, we find that the best approach, incorporating information from a domain part-of-speech tagger, offers a statistically signicant 10% relative decrease in error. The adapted parser is available under an open-source license at http://www.it.utu.fi/biolg

Neural End-to-End Learning for Computational Argumentation Mining

We investigate neural techniques for end-to-end computational argumentation mining (AM). We frame AM both as a token-based dependency parsing and as a token-based sequence tagging problem, including a multi-task learning setup. Contrary to models that operate on the argument component level, we find that framing AM as dependency parsing leads to subpar performance results. In contrast, less complex (local) tagging models based on BiLSTMs perform robustly across classification scenarios, being able to catch long-range dependencies inherent to the AM problem. Moreover, we find that jointly learning 'natural' subtasks, in a multi-task learning setup, improves performance.Comment: To be published at ACL 201

A Dependency Parsing Approach to Biomedical Text Mining

Biomedical research is currently facing a new type of challenge: an excess of information, both in terms of raw data from experiments and in the number of scientific publications describing their results. Mirroring the focus on data mining techniques to address the issues of structured data, there has recently been great interest in the development and application of text mining techniques to make more effective use of the knowledge contained in biomedical scientific publications, accessible only in the form of natural human language. This thesis describes research done in the broader scope of projects aiming to develop methods, tools and techniques for text mining tasks in general and for the biomedical domain in particular. The work described here involves more specifically the goal of extracting information from statements concerning relations of biomedical entities, such as protein-protein interactions. The approach taken is one using full parsing—syntactic analysis of the entire structure of sentences—and machine learning, aiming to develop reliable methods that can further be generalized to apply also to other domains. The five papers at the core of this thesis describe research on a number of distinct but related topics in text mining. In the first of these studies, we assessed the applicability of two popular general English parsers to biomedical text mining and, finding their performance limited, identified several specific challenges to accurate parsing of domain text. In a follow-up study focusing on parsing issues related to specialized domain terminology, we evaluated three lexical adaptation methods. We found that the accurate resolution of unknown words can considerably improve parsing performance and introduced a domain-adapted parser that reduced the error rate of theoriginal by 10% while also roughly halving parsing time. To establish the relative merits of parsers that differ in the applied formalisms and the representation given to their syntactic analyses, we have also developed evaluation methodology, considering different approaches to establishing comparable dependency-based evaluation results. We introduced a methodology for creating highly accurate conversions between different parse representations, demonstrating the feasibility of unification of idiverse syntactic schemes under a shared, application-oriented representation. In addition to allowing formalism-neutral evaluation, we argue that such unification can also increase the value of parsers for domain text mining. As a further step in this direction, we analysed the characteristics of publicly available biomedical corpora annotated for protein-protein interactions and created tools for converting them into a shared form, thus contributing also to the unification of text mining resources. The introduced unified corpora allowed us to perform a task-oriented comparative evaluation of biomedical text mining corpora. This evaluation established clear limits on the comparability of results for text mining methods evaluated on different resources, prompting further efforts toward standardization. To support this and other research, we have also designed and annotated BioInfer, the first domain corpus of its size combining annotation of syntax and biomedical entities with a detailed annotation of their relationships. The corpus represents a major design and development effort of the research group, with manual annotation that identifies over 6000 entities, 2500 relationships and 28,000 syntactic dependencies in 1100 sentences. In addition to combining these key annotations for a single set of sentences, BioInfer was also the first domain resource to introduce a representation of entity relations that is supported by ontologies and able to capture complex, structured relationships. Part I of this thesis presents a summary of this research in the broader context of a text mining system, and Part II contains reprints of the five included publications.Siirretty Doriast