Magnetic resonance multitasking for motion-resolved quantitative cardiovascular imaging.

Quantitative cardiovascular magnetic resonance (CMR) imaging can be used to characterize fibrosis, oedema, ischaemia, inflammation and other disease conditions. However, the need to reduce artefacts arising from body motion through a combination of electrocardiography (ECG) control, respiration control, and contrast-weighting selection makes CMR exams lengthy. Here, we show that physiological motions and other dynamic processes can be conceptualized as multiple time dimensions that can be resolved via low-rank tensor imaging, allowing for motion-resolved quantitative imaging with up to four time dimensions. This continuous-acquisition approach, which we name cardiovascular MR multitasking, captures - rather than avoids - motion, relaxation and other dynamics to efficiently perform quantitative CMR without the use of ECG triggering or breath holds. We demonstrate that CMR multitasking allows for T1 mapping, T1-T2 mapping and time-resolved T1 mapping of myocardial perfusion without ECG information and/or in free-breathing conditions. CMR multitasking may provide a foundation for the development of setup-free CMR imaging for the quantitative evaluation of cardiovascular health

멀티 태스킹 환경에서 GPU를 사용한 범용적 계산 응용의 효율적인 시스템 자원 활용을 위한 GPU 시스템 최적화

학위논문 (박사) -- 서울대학교 대학원 : 공과대학 전기·컴퓨터공학부, 2020. 8. 염헌영.Recently, General Purpose GPU (GPGPU) applications are playing key roles in many different research fields, such as high-performance computing (HPC) and deep learning (DL). The common feature exists in these applications is that all of them require massive computation power, which follows the high parallelism characteristics of the graphics processing unit (GPU). However, because of the resource usage pattern of each GPGPU application varies, a single application cannot fully exploit the GPU systems resources to achieve the best performance of the GPU since the GPU system is designed to provide system-level fairness to all applications instead of optimizing for a specific type. GPU multitasking can address the issue by co-locating multiple kernels with diverse resource usage patterns to share the GPU resource in parallel. However, the current GPU mul- titasking scheme focuses just on co-launching the kernels rather than making them execute more efficiently. Besides, the current GPU multitasking scheme is not open-sourced, which makes it more difficult to be optimized, since the GPGPU applications and the GPU system are unaware of the feature of each other. In this dissertation, we claim that using the support from framework between the GPU system and the GPGPU applications without modifying the application can yield better performance. We design and implement the frame- work while addressing two issues in GPGPU applications. First, we introduce a GPU memory checkpointing approach between the host memory and the device memory to address the problem that GPU memory cannot be over-subscripted in a multitasking environment. Second, we present a fine-grained GPU kernel management scheme to avoid the GPU resource under-utilization problem in a i multitasking environment. We implement and evaluate our schemes on a real GPU system. The experimental results show that our proposed approaches can solve the problems related to GPGPU applications than the existing approaches while delivering better performance.최근 범용 GPU (GPGPU) 응용 프로그램은 고성능 컴퓨팅 (HPC) 및 딥 러닝 (DL)과 같은 다양한 연구 분야에서 핵심적인 역할을 수행하고 있다. 이러한 응 용 분야의 공통적인 특성은 거대한 계산 성능이 필요한 것이며 그래픽 처리 장치 (GPU)의 높은 병렬 처리 특성과 매우 적합하다. 그러나 GPU 시스템은 특정 유 형의 응용 프로그램에 최저화하는 대신 모든 응용 프로그램에 시스템 수준의 공정 성을 제공하도록 설계되어 있으며 각 GPGPU 응용 프로그램의 자원 사용 패턴이 다양하기 때문에 단일 응용 프로그램이 GPU 시스템의 리소스를 완전히 활용하여 GPU의 최고 성능을 달성 할 수는 없다. 따라서 GPU 멀티 태스킹은 다양한 리소스 사용 패턴을 가진 여러 응용 프로그 램을 함께 배치하여 GPU 리소스를 공유함으로써 GPU 자원 사용률 저하 문제를 해결할 수 있다. 그러나 기존 GPU 멀티 태스킹 기술은 자원 사용률 관점에서 응 용 프로그램의 효율적인 실행보다 공동으로 실행하는 데 중점을 둔다. 또한 현재 GPU 멀티 태스킹 기술은 오픈 소스가 아니므로 응용 프로그램과 GPU 시스템이 서로의 기능을 인식하지 못하기 때문에 최적화하기가 더 어려울 수도 있다. 본 논문에서는 응용 프로그램을 수정 없이 GPU 시스템과 GPGPU 응용 사 이의 프레임워크를 통해 사용하면 보다 높은 응용성능과 자원 사용을 보일 수 있음을 증명하고자 한다. 그러기 위해 GPU 태스크 관리 프레임워크를 개발하여 GPU 멀티 태스킹 환경에서 발생하는 두 가지 문제를 해결하였다. 첫째, 멀티 태 스킹 환경에서 GPU 메모리 초과 할당할 수 없는 문제를 해결하기 위해 호스트 메모리와 디바이스 메모리에 체크포인트 방식을 도입하였다. 둘째, 멀티 태스킹 환 경에서 GPU 자원 사용율 저하 문제를 해결하기 위해 더욱 세분화 된 GPU 커널 관리 시스템을 제시하였다. 본 논문에서는 제안한 방법들의 효과를 증명하기 위해 실제 GPU 시스템에 92 구현하고 그 성능을 평가하였다. 제안한 접근방식이 기존 접근 방식보다 GPGPU 응용 프로그램과 관련된 문제를 해결할 수 있으며 더 높은 성능을 제공할 수 있음을 확인할 수 있었다.Chapter 1 Introduction 1 1.1 Motivation 2 1.2 Contribution . 7 1.3 Outline 8 Chapter 2 Background 10 2.1 GraphicsProcessingUnit(GPU) and CUDA 10 2.2 CheckpointandRestart . 11 2.3 ResourceSharingModel. 11 2.4 CUDAContext 12 2.5 GPUThreadBlockScheduling . 13 2.6 Multi-ProcessServicewithHyper-Q 13 Chapter 3 Checkpoint based solution for GPU memory over- subscription problem 16 3.1 Motivation 16 3.2 RelatedWork. 18 3.3 DesignandImplementation . 20 3.3.1 System Design 21 3.3.2 CUDAAPIwrappingmodule 22 3.3.3 Scheduler . 28 3.4 Evaluation. 31 3.4.1 Evaluationsetup . 31 3.4.2 OverheadofFlexGPU 32 3.4.3 Performance with GPU Benchmark Suits 34 3.4.4 Performance with Real-world Workloads 36 3.4.5 Performance of workloads composed of multiple applications 39 3.5 Summary 42 Chapter 4 A Workload-aware Fine-grained Resource Manage- ment Framework for GPGPUs 43 4.1 Motivation 43 4.2 RelatedWork. 45 4.2.1 GPUresourcesharing 45 4.2.2 GPUscheduling . 46 4.3 DesignandImplementation . 47 4.3.1 SystemArchitecture . 47 4.3.2 CUDAAPIWrappingModule . 49 4.3.3 smCompactorRuntime . 50 4.3.4 ImplementationDetails . 57 4.4 Analysis on the relation between performance and workload usage pattern 60 4.4.1 WorkloadDefinition . 60 4.4.2 Analysisonperformancesaturation 60 4.4.3 Predict the necessary SMs and thread blocks for best performance . 64 4.5 Evaluation. 69 4.5.1 EvaluationMethodology. 70 4.5.2 OverheadofsmCompactor . 71 4.5.3 Performance with Different Thread Block Counts on Dif- ferentNumberofSMs 72 4.5.4 Performance with Concurrent Kernel and Resource Sharing 74 4.6 Summary . 79 Chapter 5 Conclusion. 81 요약. 92Docto

Data Resource Management in Throughput Processors

Graphics Processing Units (GPUs) are becoming common in data centers for tasks like neural network training and image processing due to their high performance and efficiency. GPUs maintain high throughput by running thousands of threads simultaneously, issuing instructions from ready threads to hide latency in others that are stalled. While this is effective for keeping the arithmetic units busy, the challenge in GPU design is moving the data for computation at the same high rate. Any inefficiency in data movement and storage will compromise the throughput and energy efficiency of the system. Since energy consumption and cooling make up a large part of the cost of provisioning and running and a data center, making GPUs more suitable for this environment requires removing the bottlenecks and overheads that limit their efficiency. The performance of GPU workloads is often limited by the throughput of the memory resources inside each GPU core, and though many of the power-hungry structures in CPUs are not found in GPU designs, there is overhead for storing each thread's state. When sharing a GPU between workloads, contention for resources also causes interference and slowdown. This thesis develops techniques to manage and streamline the data movement and storage resources in GPUs in each of these places. The first part of this thesis resolves data movement restrictions inside each GPU core. The GPU memory system is optimized for sequential accesses, but many workloads load data in irregular or transposed patterns that cause a throughput bottleneck even when all loads are cache hits. This work identifies and leverages opportunities to merge requests across threads before sending them to the cache. While requests are waiting for merges, they can be reordered to achieve a higher cache hit rate. These methods yielded a 38% speedup for memory throughput limited workloads. Another opportunity for optimization is found in the register file. Since it must store the registers for thousands of active threads, it is the largest on-chip data storage structure on a GPU. The second work in this thesis replaces the register file with a smaller, more energy-efficient register buffer. Compiler directives allow the GPU to know ahead of time which registers will be accessed, allowing the hardware to store only the registers that will be imminently accessed in the buffer, with the rest moved to main memory. This technique reduced total GPU energy by 11%. Finally, in a data center, many different applications will be launching GPU jobs, and just as multiple processes can share the same CPU to increase its utilization, running multiple workloads on the same GPU can increase its overall throughput. However, co-runners interfere with each other in unpredictable ways, especially when sharing memory resources. The final part of this thesis controls this interference, allowing a GPU to be shared between two tiers of workloads: one tier with a high performance target and another suitable for batch jobs without deadlines. At a 90% performance target, this technique increased GPU throughput by 9.3%. GPUs' high efficiency and performance makes them a valuable accelerator in the data center. The contributions in this thesis further increase their efficiency by removing data movement and storage overheads and unlock additional performance by enabling resources to be shared between workloads while controlling interference.PHDComputer Science & EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttps://deepblue.lib.umich.edu/bitstream/2027.42/146122/1/jklooste_1.pd

Looking for change? Roll the Dice and demand Attention

Change detection, i.e. identification per pixel of changes for some classes of interest from a set of bi-temporal co-registered images, is a fundamental task in the field of remote sensing. It remains challenging due to unrelated forms of change that appear at different times in input images. Here, we propose a reliable deep learning framework for the task of semantic change detection in very high-resolution aerial images. Our framework consists of a new loss function, new attention modules, new feature extraction building blocks, and a new backbone architecture that is tailored for the task of semantic change detection. Specifically, we define a new form of set similarity, that is based on an iterative evaluation of a variant of the Dice coefficient. We use this similarity metric to define a new loss function as well as a new spatial and channel convolution Attention layer (the FracTAL). The new attention layer, designed specifically for vision tasks, is memory efficient, thus suitable for use in all levels of deep convolutional networks. Based on these, we introduce two new efficient self-contained feature extraction convolution units. We validate the performance of these feature extraction building blocks on the CIFAR10 reference data and compare the results with standard ResNet modules. Further, we introduce a new encoder/decoder scheme, a network macro-topology, that is tailored for the task of change detection. Our network moves away from any notion of subtraction of feature layers for identifying change. We validate our approach by showing excellent performance and achieving state of the art score (F1 and Intersection over Union-hereafter IoU) on two building change detection datasets, namely, the LEVIRCD (F1: 0.918, IoU: 0.848) and the WHU (F1: 0.938, IoU: 0.882) datasets.Comment: 28 pages, under review in ISPRS P&RS, 1st revision. Figures of low quality due to compression for arxiv. Reduced abstract in arxiv due to character limitation