White paper – On the use of LiDAR data at AmeriFlux sites

Our aim is to inform the AmeriFlux community on existing and upcoming LiDAR technologies (atmospheric Doppler or Raman LiDAR often deployed at flux sites are not considered here), how it is currently used at flux sites, and how we believe it could, in the future, further contribute to the AmeriFlux vision. Heterogeneity in vegetation and ground properties at various spatial scales is omnipresent at flux sites, and 3D mapping of canopy, understory, and ground surface can help move the science forward

Post-drought decline of the Amazon carbon sink

Amazon forests have experienced frequent and severe droughts in the past two decades. However, little is known about the large-scale legacy of droughts on carbon stocks and dynamics of forests. Using systematic sampling of forest structure measured by LiDAR waveforms from 2003 to 2008, here we show a significant loss of carbon over the entire Amazon basin at a rate of 0.3 ± 0.2 (95% CI) PgC yr−1 after the 2005 mega-drought, which continued persistently over the next 3 years (2005–2008). The changes in forest structure, captured by average LiDAR forest height and converted to above ground biomass carbon density, show an average loss of 2.35 ± 1.80 MgC ha−1 a year after (2006) in the epicenter of the drought. With more frequent droughts expected in future, forests of Amazon may lose their role as a robust sink of carbon, leading to a significant positive climate feedback and exacerbating warming trends.The research was partially supported by NASA Terrestrial Ecology grant at the Jet Propulsion Laboratory, California Institute of Technology and partial funding to the UCLA Institute of Environment and Sustainability from previous National Aeronautics and Space Administration and National Science Foundation grants. The authors thank NSIDC, BYU, USGS, and NASA Land Processes Distributed Active Archive Center (LP DAAC) for making their data available. (NASA Terrestrial Ecology grant at the Jet Propulsion Laboratory, California Institute of Technology)Published versio

ICESat/GLAS Data as a Measurement Tool for Peatland Topography and Peat Swamp Forest Biomass in Kalimantan, Indonesia

Indonesian peatlands are one of the largest near-surface pools of terrestrial organic carbon. Persistent logging, drainage and recurrent fires lead to huge emission of carbon each year. Since tropical peatlands are highly inaccessible, few measurements on peat depth and forest biomass are available. We assessed the applicability of quality filtered ICESat/GLAS (a spaceborne LiDAR system) data to measure peatland topography as a proxy for peat volume and to estimate peat swamp forest Above Ground Biomass (AGB) in a thoroughly investigated study site in Central Kalimantan, Indonesia. Mean Shuttle Radar Topography Mission (SRTM) elevation was correlated to the corresponding ICESat/GLAS elevation. The best results were obtained from the waveform centroid (R2 = 0.92; n = 4,186). ICESat/GLAS terrain elevation was correlated to three 3D peatland elevation models derived from SRTM data (R2 = 0.90; overall difference = −1.0 m, ±3.2 m; n = 4,045). Based on the correlation of in situ peat swamp forest AGB and airborne LiDAR data (R2 = 0.75, n = 36) an ICESat/GLAS AGB prediction model was developed (R2 = 0.61, n = 35). These results demonstrate that ICESat/GLAS data can be used to measure peat topography and to collect large numbers of forest biomass samples in remote and highly inaccessible peatland forests

Using ICESAT\u27s geoscience laser altimeter system to assess large scale forest disturbance caused by Hurricane Katrina

We assessed the use of GLAS data as a tool to quantify large-scale forest damage. GLAS data for the year prior to and following Hurricane Katrina were compared to wind speed, forest cover, and MODIS NPV maps to analyze senor sampling, and changes in mean canopy height. We detected significant losses in mean canopy height post-Katrina that increased with wind intensity, from ∼.5m in forests hit by tropical storm winds to ∼4m in forests experiencing category two force winds. Season of data acquisition was shown to influence calculations of mean canopy height. There was insufficient sampling to adequately detect changes at one degree resolution and less. We observed a strong relationship between delta NPV and post storm mean canopy heights. Changes in structure were converted into loss of standing carbon estimates using a height structured ecosystem model, yielding above ground carbon storage losses of ∼30Tg over the domain

Vegetation height products between 60° S and 60° N from ICESat GLAS data.

We present new coarse resolution (0.5� ×0.5�)vegetation height and vegetation-cover fraction data sets between 60� S and 60� N for use in climate models and ecological models. The data sets are derived from 2003–2009 measurements collected by the Geoscience Laser Altimeter System (GLAS) on the Ice, Cloud and land Elevation Satellite (ICESat), the only LiDAR instrument that provides close to global coverage. Initial vegetation height is calculated from GLAS data using a development of the model of Rosette et al. (2008) with further calibration on desert sites. Filters are developed to identify and eliminate spurious observations in the GLAS data, e.g. data that are affected by clouds, atmosphere and terrain and as such result in erroneous estimates of vegetation height or vegetation cover. Filtered GLAS vegetation height estimates are aggregated in histograms from 0 to 70m in 0.5m intervals for each 0.5�×0.5�. The GLAS vegetation height product is evaluated in four ways. Firstly, the Vegetation height data and data filters are evaluated using aircraft LiDAR measurements of the same for ten sites in the Americas, Europe, and Australia. Application of filters to the GLAS vegetation height estimates increases the correlation with aircraft data from r =0.33 to r =0.78, decreases the root-mean-square error by a factor 3 to about 6m (RMSE) or 4.5m (68% error distribution) and decreases the bias from 5.7m to −1.3 m. Secondly, the global aggregated GLAS vegetation height product is tested for sensitivity towards the choice of data quality filters; areas with frequent cloud cover and areas with steep terrain are the most sensitive to the choice of thresholds for the filters. The changes in height estimates by applying different filters are, for the main part, smaller than the overall uncertainty of 4.5–6m established from the site measurements. Thirdly, the GLAS global vegetation height product is compared with a global vegetation height product typically used in a climate model, a recent global tree height product, and a vegetation greenness product and is shown to produce realistic estimates of vegetation height. Finally, the GLAS bare soil cover fraction is compared globally with the MODIS bare soil fraction (r = 0.65) and with bare soil cover fraction estimates derived from AVHRR NDVI data (r =0.67); the GLAS treecover fraction is compared with the MODIS tree-cover fraction (r =0.79). The evaluation indicates that filters applied to the GLAS data are conservative and eliminate a large proportion of spurious data, while only in a minority of cases at the cost of removing reliable data as well. The new GLAS vegetation height product appears more realistic than previous data sets used in climate models and ecological models and hence should significantly improve simulations that involve the land surface

Estimation of forest variables using airborne laser scanning

Airborne laser scanning can provide three-dimensional measurements of the forest canopy with high efficiency and precision. There are presently a large number of airborne laser scanning instruments in operation. The aims of the studies reported in this thesis were, to develop and validate methods for estimation of forest variables using laser data, and to investigate the influence of laser system parameters on the estimates. All studies were carried out in hemi-boreal forest at a test area in southwestern Sweden (lat. 58°30’N, long. 13°40’ E). Forest variables were estimated using regression models. On plot level, the Root Mean Square Error (RMSE) for mean tree height estimations ranged between 6% and 11% of the average value for different datasets and methods. The RMSE for stem volume estimations ranged between 19% and 26% of the average value for different datasets and methods. On stand level (area 0.64 ha), the RMSE was 3% and 11% of the average value for mean tree height and stem volume estimations, respectively. A simulation model was used to investigate the effect of different scanning angles on laser measurement of tree height and canopy closure. The effect of different scanning angles was different within different simulated forest types, e.g., different tree species. High resolution laser data were used for detection of individual trees. In total, 71% of the field measurements were detected representing 91% of the total stem volume. Height and crown diameter of the detected trees could be estimated with a RMSE of 0.63 m and 0.61 m, respectively. The magnitude of the height estimation errors was similar to what is usually achieved using field inventory. Using different laser footprint diameters (0.26 to 3.68 m) gave similar estimation accuracies. The tree species Norway spruce (Picea abies L. Karst.) and Scots pine (Pinus sylvestris L.) were discriminated at individual tree level with an accuracy of 95%. The results in this thesis show that airborne laser scanners are useful as forest inventory tools. Forest variables can be estimated on tree level, plot level and stand level with similar accuracies as traditional field inventories

Abiotic controls on macroscale variations of humid tropical forest height

Spatial variation of tropical forest tree height is a key indicator of ecological processes associated with forest growth and carbon dynamics. Here we examine the macroscale variations of tree height of humid tropical forests across three continents and quantify the climate and edaphic controls on these variations. Forest tree heights are systematically sampled across global humid tropical forests with more than 2.5 million measurements from Geoscience Laser Altimeter System (GLAS) satellite observations (2004–2008). We used top canopy height (TCH) of GLAS footprints to grid the statistical mean and variance and the 90 percentile height of samples at 0.5 degrees to capture the regional variability of average and large trees globally. We used the spatial regression method (spatial eigenvector mapping-SEVM) to evaluate the contributions of climate, soil and topography in explaining and predicting the regional variations of forest height. Statistical models suggest that climate, soil, topography, and spatial contextual information together can explain more than 60% of the observed forest height variation, while climate and soil jointly explain 30% of the height variations. Soil basics, including physical compositions such as clay and sand contents, chemical properties such as PH values and cation-exchange capacity, as well as biological variables such as the depth of organic matter, all present independent but statistically significant relationships to forest height across three continents. We found significant relations between the precipitation and tree height with shorter trees on the average in areas of higher annual water stress, and large trees occurring in areas with low stress and higher annual precipitation but with significant differences across the continents. Our results confirm other landscape and regional studies by showing that soil fertility, topography and climate may jointly control a significant variation of forest height and influencing patterns of aboveground biomass stocks and dynamics. Other factors such as biotic and disturbance regimes, not included in this study, may have less influence on regional variations but strongly mediate landscape and small-scale forest structure and dynamics.The research was funded by Gabon National Park (ANPN) under the contract of 011-ANPN/2012/SE-LJTW at UCLA. We thank IIASA, FAO, USGS, NASA, Worldclim science teams for making their data available. (011-ANPN/2012/SE-LJTW - Gabon National Park (ANPN) at UCLA