VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.

VectorBase (http://www.vectorbase.org) is a NIAID-supported bioinformatics resource for invertebrate vectors of human pathogens. It hosts data for nine genomes: mosquitoes (three Anopheles gambiae genomes, Aedes aegypti and Culex quinquefasciatus), tick (Ixodes scapularis), body louse (Pediculus humanus), kissing bug (Rhodnius prolixus) and tsetse fly (Glossina morsitans). Hosted data range from genomic features and expression data to population genetics and ontologies. We describe improvements and integration of new data that expand our taxonomic coverage. Releases are bi-monthly and include the delivery of preliminary data for emerging genomes. Frequent updates of the genome browser provide VectorBase users with increasing options for visualizing their own high-throughput data. One major development is a new population biology resource for storing genomic variations, insecticide resistance data and their associated metadata. It takes advantage of improved ontologies and controlled vocabularies. Combined, these new features ensure timely release of multiple types of data in the public domain while helping overcome the bottlenecks of bioinformatics and annotation by engaging with our user community

A platform for discovering and sharing confidential ballistic crime data.

Criminal investigations generate large volumes of complex data that detectives have to analyse and understand. This data tends to be "siloed" within individual jurisdictions and re-using it in other investigations can be difficult. Investigations into trans-national crimes are hampered by the problem of discovering relevant data held by agencies in other countries and of sharing those data. Gun-crimes are one major type of incident that showcases this: guns are easily moved across borders and used in multiple crimes but finding that a weapon was used elsewhere in Europe is difficult. In this paper we report on the Odyssey Project, an EU-funded initiative to mine, manipulate and share data about weapons and crimes. The project demonstrates the automatic combining of data from disparate repositories for cross-correlation and automated analysis. The data arrive from different cultural/domains with multiple reference models using real-time data feeds and historical databases

Inferring Concept Hierarchies from Text Corpora via Hyperbolic Embeddings

We consider the task of inferring is-a relationships from large text corpora. For this purpose, we propose a new method combining hyperbolic embeddings and Hearst patterns. This approach allows us to set appropriate constraints for inferring concept hierarchies from distributional contexts while also being able to predict missing is-a relationships and to correct wrong extractions. Moreover -- and in contrast with other methods -- the hierarchical nature of hyperbolic space allows us to learn highly efficient representations and to improve the taxonomic consistency of the inferred hierarchies. Experimentally, we show that our approach achieves state-of-the-art performance on several commonly-used benchmarks

LLMs4OL: Large Language Models for Ontology Learning

We propose the LLMs4OL approach, which utilizes Large Language Models (LLMs) for Ontology Learning (OL). LLMs have shown significant advancements in natural language processing, demonstrating their ability to capture complex language patterns in different knowledge domains. Our LLMs4OL paradigm investigates the following hypothesis: \textit{Can LLMs effectively apply their language pattern capturing capability to OL, which involves automatically extracting and structuring knowledge from natural language text?} To test this hypothesis, we conduct a comprehensive evaluation using the zero-shot prompting method. We evaluate nine different LLM model families for three main OL tasks: term typing, taxonomy discovery, and extraction of non-taxonomic relations. Additionally, the evaluations encompass diverse genres of ontological knowledge, including lexicosemantic knowledge in WordNet, geographical knowledge in GeoNames, and medical knowledge in UMLS.Comment: 15 pages main content, 27 pages overall, 2 Figures, accepted for publication at ISWC 2023 research trac

Ontology-style web usage model for semantic Web applications

Current semantic recommender systems aim to exploit the website ontologies to produce valuable web recommendations. However, Web usage knowledge for recommendation is presented separately and differently from the domain ontology, this leads to the complexity of using inconsistent knowledge resources. This paper aims to solve this problem by proposing a novel ontology-style model of Web usage to represent the non-taxonomic visiting relationship among the visited pages. The output of this model is an ontology-style document which enables the discovered web usage knowledge to be sharable and machine-understandable in semantic Web applications, such as recommender systems. A case study is presented to show how this model is used in conjunction of the web usage mining and web recommendation. Two real-world datasets are used in the case study. © 2010 IEEE