6,375 research outputs found
Enhanced Management of Personal Astronomical Data with FITSManager
Although the roles of data centers and computing centers are becoming more
and more important, and on-line research is becoming the mainstream for
astronomy, individual research based on locally hosted data is still very
common. With the increase of personal storage capacity, it is easy to find
hundreds to thousands of FITS files in the personal computer of an
astrophysicist. Because Flexible Image Transport System (FITS) is a
professional data format initiated by astronomers and used mainly in the small
community, data management toolkits for FITS files are very few. Astronomers
need a powerful tool to help them manage their local astronomical data.
Although Virtual Observatory (VO) is a network oriented astronomical research
environment, its applications and related technologies provide useful solutions
to enhance the management and utilization of astronomical data hosted in an
astronomer's personal computer. FITSManager is such a tool to provide
astronomers an efficient management and utilization of their local data,
bringing VO to astronomers in a seamless and transparent way. FITSManager
provides fruitful functions for FITS file management, like thumbnail, preview,
type dependent icons, header keyword indexing and search, collaborated working
with other tools and online services, and so on. The development of the
FITSManager is an effort to fill the gap between management and analysis of
astronomical data.Comment: 12 pages, 9 figures, Accepted for publication in New Astronom
Multiplierz: An Extensible API Based Desktop Environment for Proteomics Data Analysis
BACKGROUND. Efficient analysis of results from mass spectrometry-based proteomics experiments requires access to disparate data types, including native mass spectrometry files, output from algorithms that assign peptide sequence to MS/MS spectra, and annotation for proteins and pathways from various database sources. Moreover, proteomics technologies and experimental methods are not yet standardized; hence a high degree of flexibility is necessary for efficient support of high- and low-throughput data analytic tasks. Development of a desktop environment that is sufficiently robust for deployment in data analytic pipelines, and simultaneously supports customization for programmers and non-programmers alike, has proven to be a significant challenge. RESULTS. We describe multiplierz, a flexible and open-source desktop environment for comprehensive proteomics data analysis. We use this framework to expose a prototype version of our recently proposed common API (mzAPI) designed for direct access to proprietary mass spectrometry files. In addition to routine data analytic tasks, multiplierz supports generation of information rich, portable spreadsheet-based reports. Moreover, multiplierz is designed around a "zero infrastructure" philosophy, meaning that it can be deployed by end users with little or no system administration support. Finally, access to multiplierz functionality is provided via high-level Python scripts, resulting in a fully extensible data analytic environment for rapid development of custom algorithms and deployment of high-throughput data pipelines. CONCLUSION. Collectively, mzAPI and multiplierz facilitate a wide range of data analysis tasks, spanning technology development to biological annotation, for mass spectrometry-based proteomics research.Dana-Farber Cancer Institute; National Human Genome Research Institute (P50HG004233); National Science Foundation Integrative Graduate Education and Research Traineeship grant (DGE-0654108
Quo vadimus? The 21st Century and multimedia
The concept is related of computer driven multimedia to the NASA Scientific and Technical Information Program (STIP). Multimedia is defined here as computer integration and output of text, animation, audio, video, and graphics. Multimedia is the stage of computer based information that allows access to experience. The concepts are also drawn in of hypermedia, intermedia, interactive multimedia, hypertext, imaging, cyberspace, and virtual reality. Examples of these technology developments are given for NASA, private industry, and academia. Examples of concurrent technology developments and implementations are given to show how these technologies, along with multimedia, have put us at the threshold of the 21st century. The STI Program sees multimedia as an opportunity for revolutionizing the way STI is managed
The third version of the AMBER data reduction software
We present the third release of the AMBER data reduction software by the
JMMC. This software is based on core algorithms optimized after several years
of operation. An optional graphic interface in a high level language allows the
user to control the process step by step or in a completely automatic manner.
Ongoing improvement is the implementation of a robust calibration scheme,
making use of the full calibration sets available during the night. The output
products are standard OI-FITS files, which can be used directly in high level
software like model fitting or image reconstruction tools. The software
performances are illustrated on a full data set of calibrators observed with
AMBER during 5 years taken in various instrumental setup.Comment: To be published in the proceedings of the SPIE'2010 conference on
"Optical and Infrared Interferometry II
Reflectance Transformation Imaging (RTI) System for Ancient Documentary Artefacts
This tutorial summarises our uses of reflectance transformation imaging in archaeological contexts. It introduces the UK AHRC funded project reflectance Transformation Imaging for Anciant Documentary Artefacts and demonstrates imaging methodologies
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