Developing a comprehensive framework for multimodal feature extraction

Feature extraction is a critical component of many applied data science workflows. In recent years, rapid advances in artificial intelligence and machine learning have led to an explosion of feature extraction tools and services that allow data scientists to cheaply and effectively annotate their data along a vast array of dimensions---ranging from detecting faces in images to analyzing the sentiment expressed in coherent text. Unfortunately, the proliferation of powerful feature extraction services has been mirrored by a corresponding expansion in the number of distinct interfaces to feature extraction services. In a world where nearly every new service has its own API, documentation, and/or client library, data scientists who need to combine diverse features obtained from multiple sources are often forced to write and maintain ever more elaborate feature extraction pipelines. To address this challenge, we introduce a new open-source framework for comprehensive multimodal feature extraction. Pliers is an open-source Python package that supports standardized annotation of diverse data types (video, images, audio, and text), and is expressly with both ease-of-use and extensibility in mind. Users can apply a wide range of pre-existing feature extraction tools to their data in just a few lines of Python code, and can also easily add their own custom extractors by writing modular classes. A graph-based API enables rapid development of complex feature extraction pipelines that output results in a single, standardized format. We describe the package's architecture, detail its major advantages over previous feature extraction toolboxes, and use a sample application to a large functional MRI dataset to illustrate how pliers can significantly reduce the time and effort required to construct sophisticated feature extraction workflows while increasing code clarity and maintainability

Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues

Enhanced visualisation of dance performance from automatically synchronised multimodal recordings

The Huawei/3DLife Grand Challenge Dataset provides multimodal recordings of Salsa dancing, consisting of audiovisual streams along with depth maps and inertial measurements. In this paper, we propose a system for augmented reality-based evaluations of Salsa dancer performances. An essential step for such a system is the automatic temporal synchronisation of the multiple modalities captured from different sensors, for which we propose efficient solutions. Furthermore, we contribute modules for the automatic analysis of dance performances and present an original software application, specifically designed for the evaluation scenario considered, which enables an enhanced dance visualisation experience, through the augmentation of the original media with the results of our automatic analyses

Fusion of Heterogeneous Earth Observation Data for the Classification of Local Climate Zones

This paper proposes a novel framework for fusing multi-temporal, multispectral satellite images and OpenStreetMap (OSM) data for the classification of local climate zones (LCZs). Feature stacking is the most commonly-used method of data fusion but does not consider the heterogeneity of multimodal optical images and OSM data, which becomes its main drawback. The proposed framework processes two data sources separately and then combines them at the model level through two fusion models (the landuse fusion model and building fusion model), which aim to fuse optical images with landuse and buildings layers of OSM data, respectively. In addition, a new approach to detecting building incompleteness of OSM data is proposed. The proposed framework was trained and tested using data from the 2017 IEEE GRSS Data Fusion Contest, and further validated on one additional test set containing test samples which are manually labeled in Munich and New York. Experimental results have indicated that compared to the feature stacking-based baseline framework the proposed framework is effective in fusing optical images with OSM data for the classification of LCZs with high generalization capability on a large scale. The classification accuracy of the proposed framework outperforms the baseline framework by more than 6% and 2%, while testing on the test set of 2017 IEEE GRSS Data Fusion Contest and the additional test set, respectively. In addition, the proposed framework is less sensitive to spectral diversities of optical satellite images and thus achieves more stable classification performance than state-of-the art frameworks.Comment: accepted by TGR