Data Provenance Inference in Logic Programming: Reducing Effort of Instance-driven Debugging

Data provenance allows scientists in different domains validating their models and algorithms to find out anomalies and unexpected behaviors. In previous works, we described on-the-fly interpretation of (Python) scripts to build workflow provenance graph automatically and then infer fine-grained provenance information based on the workflow provenance graph and the availability of data. To broaden the scope of our approach and demonstrate its viability, in this paper we extend it beyond procedural languages, to be used for purely declarative languages such as logic programming under the stable model semantics. For experiments and validation, we use the Answer Set Programming solver oClingo, which makes it possible to formulate and solve stream reasoning problems in a purely declarative fashion. We demonstrate how the benefits of the provenance inference over the explicit provenance still holds in a declarative setting, and we briefly discuss the potential impact for declarative programming, in particular for instance-driven debugging of the model in declarative problem solving

Backdoors to Normality for Disjunctive Logic Programs

Over the last two decades, propositional satisfiability (SAT) has become one of the most successful and widely applied techniques for the solution of NP-complete problems. The aim of this paper is to investigate theoretically how Sat can be utilized for the efficient solution of problems that are harder than NP or co-NP. In particular, we consider the fundamental reasoning problems in propositional disjunctive answer set programming (ASP), Brave Reasoning and Skeptical Reasoning, which ask whether a given atom is contained in at least one or in all answer sets, respectively. Both problems are located at the second level of the Polynomial Hierarchy and thus assumed to be harder than NP or co-NP. One cannot transform these two reasoning problems into SAT in polynomial time, unless the Polynomial Hierarchy collapses. We show that certain structural aspects of disjunctive logic programs can be utilized to break through this complexity barrier, using new techniques from Parameterized Complexity. In particular, we exhibit transformations from Brave and Skeptical Reasoning to SAT that run in time O(2^k n^2) where k is a structural parameter of the instance and n the input size. In other words, the reduction is fixed-parameter tractable for parameter k. As the parameter k we take the size of a smallest backdoor with respect to the class of normal (i.e., disjunction-free) programs. Such a backdoor is a set of atoms that when deleted makes the program normal. In consequence, the combinatorial explosion, which is expected when transforming a problem from the second level of the Polynomial Hierarchy to the first level, can now be confined to the parameter k, while the running time of the reduction is polynomial in the input size n, where the order of the polynomial is independent of k.Comment: A short version will appear in the Proceedings of the Proceedings of the 27th AAAI Conference on Artificial Intelligence (AAAI'13). A preliminary version of the paper was presented on the workshop Answer Set Programming and Other Computing Paradigms (ASPOCP 2012), 5th International Workshop, September 4, 2012, Budapest, Hungar

A Multi-Engine Approach to Answer Set Programming

Answer Set Programming (ASP) is a truly-declarative programming paradigm proposed in the area of non-monotonic reasoning and logic programming, that has been recently employed in many applications. The development of efficient ASP systems is, thus, crucial. Having in mind the task of improving the solving methods for ASP, there are two usual ways to reach this goal: $(i)$ extending state-of-the-art techniques and ASP solvers, or $(ii)$ designing a new ASP solver from scratch. An alternative to these trends is to build on top of state-of-the-art solvers, and to apply machine learning techniques for choosing automatically the "best" available solver on a per-instance basis. In this paper we pursue this latter direction. We first define a set of cheap-to-compute syntactic features that characterize several aspects of ASP programs. Then, we apply classification methods that, given the features of the instances in a {\sl training} set and the solvers' performance on these instances, inductively learn algorithm selection strategies to be applied to a {\sl test} set. We report the results of a number of experiments considering solvers and different training and test sets of instances taken from the ones submitted to the "System Track" of the 3rd ASP Competition. Our analysis shows that, by applying machine learning techniques to ASP solving, it is possible to obtain very robust performance: our approach can solve more instances compared with any solver that entered the 3rd ASP Competition. (To appear in Theory and Practice of Logic Programming (TPLP).)Comment: 26 pages, 8 figure

Probably Approximately Correct Learning of Regulatory Networks from Time-Series Data

International audienceAutomating the process of model building from experimental data is a very desirable goal to palliate the lack of modellers for many applications. However, despite the spectacular progress of machine learning techniques in data analytics, classification, clustering and prediction making, learning dynamical models from data time-series is still challenging. In this paper we investigate the use of the Probably Approximately Correct (PAC) learning framework of Leslie Valiant as a method for the automated discovery of influence models of biochemical processes from Boolean and stochastic traces. We show that Thomas' Boolean influence systems can be naturally represented by k-CNF formulae, and learned from time-series data with a number of Boolean activation samples per species quasi-linear in the precision of the learned model, and that positive Boolean influence systems can be represented by monotone DNF formulae and learned actively with both activation samples and oracle calls. We consider Boolean traces and Boolean abstractions of stochastic simulation traces, and study the space-time tradeoff there is between the diversity of initial states and the length of the time horizon, and its impact on the error bounds provided by the PAC learning algorithms. We evaluate the performance of this approach on a model of T-lymphocyte differentiation, with and without prior knowledge, and discuss its merits as well as its limitations with respect to realistic experiments