74,223 research outputs found
Matrix Factorization at Scale: a Comparison of Scientific Data Analytics in Spark and C+MPI Using Three Case Studies
We explore the trade-offs of performing linear algebra using Apache Spark,
compared to traditional C and MPI implementations on HPC platforms. Spark is
designed for data analytics on cluster computing platforms with access to local
disks and is optimized for data-parallel tasks. We examine three widely-used
and important matrix factorizations: NMF (for physical plausability), PCA (for
its ubiquity) and CX (for data interpretability). We apply these methods to
TB-sized problems in particle physics, climate modeling and bioimaging. The
data matrices are tall-and-skinny which enable the algorithms to map
conveniently into Spark's data-parallel model. We perform scaling experiments
on up to 1600 Cray XC40 nodes, describe the sources of slowdowns, and provide
tuning guidance to obtain high performance
A general framework for efficient FPGA implementation of matrix product
Original article can be found at: http://www.medjcn.com/ Copyright Softmotor LimitedHigh performance systems are required by the developers for fast processing of computationally intensive applications. Reconfigurable hardware devices in the form of Filed-Programmable Gate Arrays (FPGAs) have been proposed as viable system building blocks in the construction of high performance systems at an economical price. Given the importance and the use of matrix algorithms in scientific computing applications, they seem ideal candidates to harness and exploit the advantages offered by FPGAs. In this paper, a system for matrix algorithm cores generation is described. The system provides a catalog of efficient user-customizable cores, designed for FPGA implementation, ranging in three different matrix algorithm categories: (i) matrix operations, (ii) matrix transforms and (iii) matrix decomposition. The generated core can be either a general purpose or a specific application core. The methodology used in the design and implementation of two specific image processing application cores is presented. The first core is a fully pipelined matrix multiplier for colour space conversion based on distributed arithmetic principles while the second one is a parallel floating-point matrix multiplier designed for 3D affine transformations.Peer reviewe
Tensor Decompositions for Signal Processing Applications From Two-way to Multiway Component Analysis
The widespread use of multi-sensor technology and the emergence of big
datasets has highlighted the limitations of standard flat-view matrix models
and the necessity to move towards more versatile data analysis tools. We show
that higher-order tensors (i.e., multiway arrays) enable such a fundamental
paradigm shift towards models that are essentially polynomial and whose
uniqueness, unlike the matrix methods, is guaranteed under verymild and natural
conditions. Benefiting fromthe power ofmultilinear algebra as theirmathematical
backbone, data analysis techniques using tensor decompositions are shown to
have great flexibility in the choice of constraints that match data properties,
and to find more general latent components in the data than matrix-based
methods. A comprehensive introduction to tensor decompositions is provided from
a signal processing perspective, starting from the algebraic foundations, via
basic Canonical Polyadic and Tucker models, through to advanced cause-effect
and multi-view data analysis schemes. We show that tensor decompositions enable
natural generalizations of some commonly used signal processing paradigms, such
as canonical correlation and subspace techniques, signal separation, linear
regression, feature extraction and classification. We also cover computational
aspects, and point out how ideas from compressed sensing and scientific
computing may be used for addressing the otherwise unmanageable storage and
manipulation problems associated with big datasets. The concepts are supported
by illustrative real world case studies illuminating the benefits of the tensor
framework, as efficient and promising tools for modern signal processing, data
analysis and machine learning applications; these benefits also extend to
vector/matrix data through tensorization. Keywords: ICA, NMF, CPD, Tucker
decomposition, HOSVD, tensor networks, Tensor Train
Optimal Control of Applications for Hybrid Cloud Services
Development of cloud computing enables to move Big Data in the hybrid cloud
services. This requires research of all processing systems and data structures
for provide QoS. Due to the fact that there are many bottlenecks requires
monitoring and control system when performing a query. The models and
optimization criteria for the design of systems in a hybrid cloud
infrastructures are created. In this article suggested approaches and the
results of this build.Comment: 4 pages, Proc. conf. (not published). arXiv admin note: text overlap
with arXiv:1402.146
Nearest-Neighbor Interaction Systems in the Tensor-Train Format
Low-rank tensor approximation approaches have become an important tool in the
scientific computing community. The aim is to enable the simulation and
analysis of high-dimensional problems which cannot be solved using conventional
methods anymore due to the so-called curse of dimensionality. This requires
techniques to handle linear operators defined on extremely large state spaces
and to solve the resulting systems of linear equations or eigenvalue problems.
In this paper, we present a systematic tensor-train decomposition for
nearest-neighbor interaction systems which is applicable to a host of different
problems. With the aid of this decomposition, it is possible to reduce the
memory consumption as well as the computational costs significantly.
Furthermore, it can be shown that in some cases the rank of the tensor
decomposition does not depend on the network size. The format is thus feasible
even for high-dimensional systems. We will illustrate the results with several
guiding examples such as the Ising model, a system of coupled oscillators, and
a CO oxidation model
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Preparing sparse solvers for exascale computing.
Sparse solvers provide essential functionality for a wide variety of scientific applications. Highly parallel sparse solvers are essential for continuing advances in high-fidelity, multi-physics and multi-scale simulations, especially as we target exascale platforms. This paper describes the challenges, strategies and progress of the US Department of Energy Exascale Computing project towards providing sparse solvers for exascale computing platforms. We address the demands of systems with thousands of high-performance node devices where exposing concurrency, hiding latency and creating alternative algorithms become essential. The efforts described here are works in progress, highlighting current success and upcoming challenges. This article is part of a discussion meeting issue 'Numerical algorithms for high-performance computational science'
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