Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers

Carrot is one of the most economically important vegetables worldwide, but genetic and genomic resources supporting carrot breeding remain limited. We developed a Diversity Arrays Technology (DArT) platform for wild and cultivated carrot and used it to investigate genetic diversity and to develop a saturated genetic linkage map of carrot. We analyzed a set of 900 DArT markers in a collection of plant materials comprising 94 cultivated and 65 wild carrot accessions. The accessions were attributed to three separate groups: wild, Eastern cultivated and Western cultivated. Twenty-seven markers showing signatures for selection were identified. They showed a directional shift in frequency from the wild to the cultivated, likely reflecting diversifying selection imposed in the course of domestication. A genetic linkage map constructed using 188 F2 plants comprised 431 markers with an average distance of 1.1 cM, divided into nine linkage groups. Using previously anchored single nucleotide polymorphisms, the linkage groups were physically attributed to the nine carrot chromosomes. A cluster of markers mapping to chromosome 8 showed significant segregation distortion. Two of the 27 DArT markers with signatures for selection were segregating in the mapping population and were localized on chromosomes 2 and 6. Chromosome 2 was previously shown to carry the Vrn1 gene governing the biennial growth habit essential for cultivated carrot. The results reported here provide background for further research on the history of carrot domestication and identify genomic regions potentially important for modern carrot breeding

Ecology of the Cerambycidae (Coleoptera) of the Huron Mountains in Northern Michigan

Eighty-nine species of Cerambycidae were collected during a five-year survey of the woodboring beetle fauna of the Huron Mountains in Marquette County, Michigan. Host plants were determined for 51 species. Observations were made of species abundance and phenology, and the blossoms visited by anthophilous cerambycids

A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation

Purple carrots accumulate large quantities of anthocyanins in their roots and leaves. These flavonoid pigments possess antioxidant activity and are implicated in providing health benefits. Informative, saturated linkage maps associated with well characterized populations segregating for anthocyanin pigmentation have not been developed. To investigate the genetic architecture conditioning anthocyanin pigmentation we scored root color visually, quantified root anthocyanin pigments by high performance liquid chromatography in segregating F2, F3 and F4 generations of a mapping population, mapped quantitative trait loci (QTL) onto a dense gene-derived single nucleotide polymorphism (SNP)-based linkage map, and performed comparative trait mapping with two unrelated populations. Results: Root pigmentation, scored visually as presence or absence of purple coloration, segregated in a pattern consistent with a two gene model in an F2, and progeny testing of F3-F4 families confirmed the proposed genetic model. Purple petiole pigmentation was conditioned by a single dominant gene that co-segregates with one of the genes conditioning root pigmentation. Root total pigment estimate (RTPE) was scored as the percentage of the root with purple color. Conclusions: This study generated the first high resolution gene-derived SNP-based linkage map in the Apiaceae. Two regions of chromosome 3 with co-localized QTL for all anthocyanin pigments and for RTPE, largely condition anthocyanin accumulation in carrot roots and leaves. Loci controlling root and petiole anthocyanin pigmentation differ across diverse carrot genetic backgrounds.Fil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza; Argentina. University of Wisconsin; Estados Unidos. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias; ArgentinaFil: Iorizzo, Massimo. University of Wisconsin; Estados UnidosFil: Yildiz, Mehtap. Yuzuncu Yil University; TurquíaFil: Senalik, Douglas. University of Wisconsin; Estados UnidosFil: Parsons, Joshua. University of Wisconsin; Estados UnidosFil: Ellison, Shelby. University of Wisconsin; Estados UnidosFil: Simon, Philipp W.. University of Wisconsin; Estados Unido

Distribution and Biology of the Sphecine Wasps of Michigan (Hymenoptera: Sphecidae: Sphecinae)

Biological information and distribution maps are provided for the 26 species of thread-waisted wasps that occur in Michigan. Podium luctuosum is a new state record. Sixty percent of the eastern North America sphecine fauna is represented in Michigan

TPLATE recruitment reveals endocytic dynamics at sites of symbiotic interface assembly in arbuscular mycorrhizal interactions

Introduction: Arbuscular mycorrhizal (AM) symbiosis between soil fungi and the majority of plants is based on a mutualistic exchange of organic and inorganic nutrients. This takes place inside root cortical cells that harbor an arbuscule: a highly branched intracellular fungal hypha enveloped by an extension of the host cell membrane—the perifungal membrane—which outlines a specialized symbiotic interface compartment. The perifungal membrane develops around each intracellular hypha as the symbiotic fungus proceeds across the root tissues; its biogenesis is the result of an extensive exocytic process and shows a few similarities with cell plate insertion which occurs at the end of somatic cytokinesis. Materials and Methods: We here analyzed the subcellular localization of a GFP fusion with TPLATE, a subunit of the endocytic TPLATE complex (TPC), a central actor in plant clathrin-mediated endocytosis with a role in cell plate anchoring with the parental plasma membrane. Results: Our observations demonstrate that Daucus carota and Medicago truncatula root organ cultures expressing a 35S::AtTPLATE-GFP construct accumulate strong fluorescent green signal at sites of symbiotic interface construction, along recently formed perifungal membranes and at sites of cell-to-cell hyphal passage between adjacent cortical cells, where the perifungal membrane fuses with the plasmalemma. Discussion: Our results strongly suggest that TPC-mediated endocytic processes are active during perifungal membrane interface biogenesis—alongside exocytic transport. This novel conclusion, which might be correlated to the accumulation of late endosomes in the vicinity of the developing interface, hints at the involvement of TPC-dependent membrane remodeling during the intracellular accommodation of AM fungi

First report of Mesocriconema sphaerocephalum (Taylor, 1936) Loof, 1989 associated with carrot (Daucus carota subsp. Stativus) in Vietnam

Our study recorded the presence of Mesocriconema sphaeroce phalum on carrot in Hanoi city and Hai Duong province in Vietnam. This species was identified by morphometric, morphological characterizations, and molecular characterization of D2D3 of 28S rDNA sequence. To our knowledge, this is the first report of M. sphaerocephalum on carrot in Vietnam

Extruded flakes from pearl millet (Pennisetum glaucum)-carrot (Daucus carota) blended flours-production, nutritional and sensory attributes

Open Access JournalMillet flour (M) and carrot flour(C) were produced and blended in the ratios 100M:0C, 95M:5C, 90M:10C, 85M:15C and 80M:20C respectively to produce extruded flakes. The composite flours were subjected to analysis of the proximate and mineral composition, as well as functional and pasting properties. Extruded flakes were analyzed for proximate composition, total carotenoids, colour and sensory evaluation. There was no significant difference (p > 0.05) in the proximate, functional and pasting properties but there were significant differences (p 0.05) affected by extrusion cooking. In terms of the lightness (L*), redness (a*) and yellowness (b*), 100% millet flakes had the least values of 50.09, 0.076 and 10.39 respectively. Sample with 85M:15C had the overall acceptance score of 7.25. In terms of colour and taste, the sample with 90M:10C had the highest scores of 8.50 and 6.50 respectively. Sample with 85M: 15C was most preferred in terms of crunchiness. The results indicate that pearl millet and carrot are rich in different nutrient when blended in the right proportions to make composite flour, it would produce nutrient-dense food product rich in protein, vitamin Aand minerals

Aphids associated with shrubs, herbaceous plants and crops in the Maltese Archipelago (Hemiptera, Aphidoidea)

A survey of the aphids associated with Maltese shrubs, herbaceous plants and crops was carried out. Sixty six aphid species were recorded from more than 90 species of host plants. Forty eight aphids were recorded from the Maltese islands for the fi rst time bringing the total number of aphid species known from these islands to 99. New records include: Acyrthosiphon lactucae, A. pisum, Anoecia vagans, Aphis alienus, A. euphorbiae, A. hederae, A. lambersi, A. multifl orae, A. nasturtii, A. parietariae, A. picridicola, A. ruborum, A. sedi, Aulacorthum solani, Brachycaudus helichrysi, Capitophorus sp. nr. similis, Clypeoaphis suaedae, Cryptomyzus korschelti, Dysaphis apiifolia, D. foeniculus, D. pyri, D. tulipae, Hyadaphis coriandri, H. foeniculi, H. passerinii, Hyperomyzus lactucae, Idiopterus nephrelepidis, Macrosiphoniella absinthii, M. artemisiae, M. sanborni, Macrosiphum euphorbiae, Ma. rosae, Melanaphis donacis, Metopolophium dirhodum, Pterochloroides persicae, Rectinasus buxtoni, Rhopalosiphum maidis, R. padi, R. rufi abdominale, Schizaphis graminum, Semiaphis dauci, Sipha maydis, Sitobion avenae, S. fragariae, Therioaphis alatina, Uroleucon inulae, U. hypochoeridis and U. sonchi. Of these 99 aphid species, 58 are of economic importance and 16 are alien introductions. For 15 of the aphid species, a total of 22 new host-plant records are made. Ten species of ants were found attending 18 aphid species.peer-reviewe

Effect of Turmeric and Carrot Seed Extracts on Serum Liver Biomarkers and Hepatic Lipid Peroxidation, Antioxidant Enzymes and Total Antioxidant Status in Rats

Introduction: Pathogenic role of free radicals are well known in various metabolic diseases. They originate from internal and external sources of body. Essential roles of antioxidant defense system for cellular redox regulation and free radical scavenging activity were described in this study. Many in vitro investigations have shown that turmeric (TE) and carrot seed extract (CSE) exhibits to possess antioxidant activities. In this study, we evaluated the antioxidant potentials of ethanolic TE and CSE based on in vivo experiment in the rats. Methods: Animals were assigned to six groups: the 1st and 2nd groups were control groups and 2nd group received 0.2 ml dimethyl sulphoxide as vehicle treated group; other four experimental groups received different doses of TE (100, 200 mg/kg b.w.) and CSE (200, 400 mg/kg b.w.) by gavages, respectively for a period of one month. The indicators of oxidative stress, lipids peroxidation, markers of hepatocyte injury and biliary function markers were measured. Results: The levels of superoxide dismutase, catalase, and glutathione peroxidase were significantly stimulated in the hepatic tissue of treatment groups. The malondialdehyde contents of liver tissue were significantly reduced in the groups fed with TE and CSE. Serum levels of alanine aminotransferase, aspartate aminotransferase and alkaline phosphatase, in treated groups were found to be significantly decreased, whereas albumin and total protein increased as compared to the control groups (P<0.05). Conclusion: this study showed that the regular intake of TE and CSE through the diet can improve antioxidant status and inhibit peroxidation activity in the liver tissue so that using these extracts may protect tissue oxidative stress

Morphological diversity of Meloidogyne spp. from carrot (Daucus carota subsp. Sativus) in Vietnam

Carrot (Daucus carota subsp. Sativus) is known as one of the most widely cultivated and widely consumed vegetables in the world due to its nutritional and economic values. During a survey of nematodes parasites carrots from Vietnam, six populations of three species of root-knot nematodes, namely M. incognita, M. arenaria, and M. graminicola were found. The species specific primers were confirmed before morphological studies. By combining the morphology and morphometry of the females, males, and juveniles, this study provided useful references for classification of Meloidogyne on carrots in the future. Quantitative morphological studies reveal profound changes corresponding with the generation of morphological disparity at high taxonomic diversity. Especially, this study provided the first morphological and morphometric information of M. graminicola, that is known as aquatic root-knot nematodes, on carrots