Cross-Attention in Coupled Unmixing Nets for Unsupervised Hyperspectral Super-Resolution

The recent advancement of deep learning techniques has made great progress on hyperspectral image super-resolution (HSI-SR). Yet the development of unsupervised deep networks remains challenging for this task. To this end, we propose a novel coupled unmixing network with a cross-attention mechanism, CUCaNet for short, to enhance the spatial resolution of HSI by means of higher-spatial-resolution multispectral image (MSI). Inspired by coupled spectral unmixing, a two-stream convolutional autoencoder framework is taken as backbone to jointly decompose MS and HS data into a spectrally meaningful basis and corresponding coefficients. CUCaNet is capable of adaptively learning spectral and spatial response functions from HS-MS correspondences by enforcing reasonable consistency assumptions on the networks. Moreover, a cross-attention module is devised to yield more effective spatial-spectral information transfer in networks. Extensive experiments are conducted on three widely-used HS-MS datasets in comparison with state-of-the-art HSI-SR models, demonstrating the superiority of the CUCaNet in the HSI-SR application. Furthermore, the codes and datasets will be available at: https://github.com/danfenghong/ECCV2020_CUCaNet

Deep Learning for Embedding and Integrating Multimodal Biomedical Data

Biomedical data is being generated in extremely high throughput and high dimension by technologies in areas ranging from single-cell genomics, proteomics, and transcriptomics (cytometry, single-cell RNA and ATAC sequencing) to neuroscience and cognition (fMRI and PET) to pharmaceuticals (drug perturbations and interactions). These new and emerging technologies and the datasets they create give an unprecedented view into the workings of their respective biological entities. However, there is a large gap between the information contained in these datasets and the insights that current machine learning methods can extract from them. This is especially the case when multiple technologies can measure the same underlying biological entity or system. By separately analyzing the same system but from different views gathered by different data modalities, patterns are left unobserved if they only emerge from the multi-dimensional joint representation of all of the modalities together. Through an interdisciplinary approach that emphasizes active collaboration with data domain experts, my research has developed models for data integration, extracting important insights through the joint analysis of varied data sources. In this thesis, I discuss models that address this task of multi-modal data integration, especially generative adversarial networks (GANs) and autoencoders (AEs). My research has been focused on using both of these models in a generative way for concrete problems in cutting-edge scientific applications rather than the exclusive focus on the generation of high-resolution natural images. The research in this thesis is united around ideas of building models that can extract new knowledge from scientific data inaccessible to currently existing methods

Deep Decomposition Learning for Inverse Imaging Problems

Deep learning is emerging as a new paradigm for solving inverse imaging problems. However, the deep learning methods often lack the assurance of traditional physics-based methods due to the lack of physical information considerations in neural network training and deploying. The appropriate supervision and explicit calibration by the information of the physic model can enhance the neural network learning and its practical performance. In this paper, inspired by the geometry that data can be decomposed by two components from the null-space of the forward operator and the range space of its pseudo-inverse, we train neural networks to learn the two components and therefore learn the decomposition, i.e. we explicitly reformulate the neural network layers as learning range-nullspace decomposition functions with reference to the layer inputs, instead of learning unreferenced functions. We empirically show that the proposed framework demonstrates superior performance over recent deep residual learning, unrolled learning and nullspace learning on tasks including compressive sensing medical imaging and natural image super-resolution. Our code is available at https://github.com/edongdongchen/DDN.Comment: To appear in ECCV 202