5,979 research outputs found
Convex Independence in Permutation Graphs
A set C of vertices of a graph is P_3-convex if every vertex outside C has at
most one neighbor in C. The convex hull \sigma(A) of a set A is the smallest
P_3-convex set that contains A. A set M is convexly independent if for every
vertex x \in M, x \notin \sigma(M-x). We show that the maximal number of
vertices that a convexly independent set in a permutation graph can have, can
be computed in polynomial time
Generalized Permutohedra from Probabilistic Graphical Models
A graphical model encodes conditional independence relations via the Markov
properties. For an undirected graph these conditional independence relations
can be represented by a simple polytope known as the graph associahedron, which
can be constructed as a Minkowski sum of standard simplices. There is an
analogous polytope for conditional independence relations coming from a regular
Gaussian model, and it can be defined using multiinformation or relative
entropy. For directed acyclic graphical models and also for mixed graphical
models containing undirected, directed and bidirected edges, we give a
construction of this polytope, up to equivalence of normal fans, as a Minkowski
sum of matroid polytopes. Finally, we apply this geometric insight to construct
a new ordering-based search algorithm for causal inference via directed acyclic
graphical models.Comment: Appendix B is expanded. Final version to appear in SIAM J. Discrete
Mat
Convex Rank Tests and Semigraphoids
Convex rank tests are partitions of the symmetric group which have desirable
geometric properties. The statistical tests defined by such partitions involve
counting all permutations in the equivalence classes. Each class consists of
the linear extensions of a partially ordered set specified by data. Our methods
refine existing rank tests of non-parametric statistics, such as the sign test
and the runs test, and are useful for exploratory analysis of ordinal data. We
establish a bijection between convex rank tests and probabilistic conditional
independence structures known as semigraphoids. The subclass of submodular rank
tests is derived from faces of the cone of submodular functions, or from
Minkowski summands of the permutohedron. We enumerate all small instances of
such rank tests. Of particular interest are graphical tests, which correspond
to both graphical models and to graph associahedra
Recognizing Graph Theoretic Properties with Polynomial Ideals
Many hard combinatorial problems can be modeled by a system of polynomial
equations. N. Alon coined the term polynomial method to describe the use of
nonlinear polynomials when solving combinatorial problems. We continue the
exploration of the polynomial method and show how the algorithmic theory of
polynomial ideals can be used to detect k-colorability, unique Hamiltonicity,
and automorphism rigidity of graphs. Our techniques are diverse and involve
Nullstellensatz certificates, linear algebra over finite fields, Groebner
bases, toric algebra, convex programming, and real algebraic geometry.Comment: 20 pages, 3 figure
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