2,544 research outputs found
A Graph Rewriting Approach for Transformational Design of Digital Systems
Transformational design integrates design and verification. It combines ācorrectness by constructionā and design creativity by the use of pre-proven behaviour preserving transformations as design steps. The formal aspects of this methodology are hidden in the transformations. A constraint is the availability of a design representation with a compositional formal semantics. Graph representations are useful design representations because of their visualisation of design information. In this paper graph rewriting theory, as developed in the last twenty years in mathematics, is shown to be a useful basis for a formal framework for transformational design. The semantic aspects of graphs which are no part of graph rewriting theory are included by the use of attributed graphs. The used attribute algebra, table algebra, is a relation algebra derived from database theory. The combination of graph rewriting, table algebra and transformational design is new
A cDNA Microarray Gene Expression Data Classifier for Clinical Diagnostics Based on Graph Theory
Despite great advances in discovering cancer molecular profiles, the proper application of microarray technology to routine clinical diagnostics is still a challenge. Current practices in the classification of microarrays' data show two main limitations: the reliability of the training data sets used to build the classifiers, and the classifiers' performances, especially when the sample to be classified does not belong to any of the available classes. In this case, state-of-the-art algorithms usually produce a high rate of false positives that, in real diagnostic applications, are unacceptable. To address this problem, this paper presents a new cDNA microarray data classification algorithm based on graph theory and is able to overcome most of the limitations of known classification methodologies. The classifier works by analyzing gene expression data organized in an innovative data structure based on graphs, where vertices correspond to genes and edges to gene expression relationships. To demonstrate the novelty of the proposed approach, the authors present an experimental performance comparison between the proposed classifier and several state-of-the-art classification algorithm
An Exercise in Invariant-based Programming with Interactive and Automatic Theorem Prover Support
Invariant-Based Programming (IBP) is a diagram-based correct-by-construction
programming methodology in which the program is structured around the
invariants, which are additionally formulated before the actual code. Socos is
a program construction and verification environment built specifically to
support IBP. The front-end to Socos is a graphical diagram editor, allowing the
programmer to construct invariant-based programs and check their correctness.
The back-end component of Socos, the program checker, computes the verification
conditions of the program and tries to prove them automatically. It uses the
theorem prover PVS and the SMT solver Yices to discharge as many of the
verification conditions as possible without user interaction. In this paper, we
first describe the Socos environment from a user and systems level perspective;
we then exemplify the IBP workflow by building a verified implementation of
heapsort in Socos. The case study highlights the role of both automatic and
interactive theorem proving in three sequential stages of the IBP workflow:
developing the background theory, formulating the program specification and
invariants, and proving the correctness of the final implementation.Comment: In Proceedings THedu'11, arXiv:1202.453
Finitely Correlated Representations of Product Systems of -Correspondences over
We study isometric representations of product systems of correspondences over
the semigroup which are minimal dilations of finite dimensional,
fully coisometric representations. We show the existence of a unique minimal
cyclic coinvariant subspace for all such representations. The compression of
the representation to this subspace is shown to be complete unitary invariant.
For a certain class of graph algebras the nonself-adjoint \textsc{wot}-closed
algebra generated by these representations is shown to contain the projection
onto the minimal cyclic coinvariant subspace. This class includes free
semigroup algebras. This result extends to a class of higher-rank graph
algebras which includes higher-rank graphs with a single vertex.Comment: 34 pages; Introduction extended; to appear in the Journal of
Functional Analysi
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